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Published February 2, 2024 | Version v1
Dataset Open

Mouse Brain Atlas Ex Vivo MRI

Authors/Creators

Contributors

  • 1. Duke University Hospital
  • 2. ROR icon Duke Medical Center
  • 3. ROR icon University of Pennsylvania

Description

The data set is part of the SAMBA pipeline, to be used for mousebrain atlas based segmentation and accompanies the following publication (https://pubmed.ncbi.nlm.nih.gov/30565026/):

Anderson RJ, Cook JJ, Delpratt N, Nouls JC, Gu B, McNamara JO, Avants BB, Johnson GA, Badea A. Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. Neuroinformatics. 2019 Jul;17(3):451-472. doi: 10.1007/s12021-018-9410-0. PMID: 30565026; PMCID: PMC6584586.

The creation of the reference atlas is summarily described in the publication:

"An atlas based segmentation using a novel symmetrized atlas featuring 166 regions on each side, and having as initial point the parcellations described in (Calabrese et al. 2015b) provided label sets for 5 KA brains."

Files

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Additional details

Funding

National Institute on Aging
K01 AG041211: Quantitative MR Microscopy of Phenotypic Biomarkers in Alzheimer's Disease K01 AG041211
National Institute of Biomedical Imaging and Bioengineering
Steps towards building a reference mouse brain 5P41RR005959-15
National Institute on Aging
Brain networks in mouse models of aging R01 AG066184
National Institute of Biomedical Imaging and Bioengineering
INTEGRATED CENTER FOR IN VIVO MICROSCOPY P41 EB015897
National Institute on Aging
Sex and APOE genotype interact to alter immune regulated metabolism in AD R56 AG057895
National Institute of Biomedical Imaging and Bioengineering
Agilent Direct Drive 9.4T MRS/MRI Console S10 OD010683
National Institute on Aging
Sex and APOE genotype interact to alter immune regulated metabolism in AD RF1 AG057895
National Institute on Aging
Brain networks in mouse models of aging R01AG066184
National Institute on Aging
Cardiac photon counting CT and its application in studying interactions between Alzheimer's and heart disease R01AG070149

Dates

Submitted
2024