nextstrain/nextclade: 3.1.0
Authors/Creators
- 1. Biozentrum, University of Basel
- 2. @neherlab @nextstrain
- 3. @FredHutch / @blab / @nextstrain
- 4. @nextstrain
- 5. @Snyk
- 6. University of North Carolina
- 7. University of Freiburg
- 8. ETH Zurich @cevo-public @GenSpectrum
- 9. Oklahoma Medical Research Foundation
- 10. Faculty of Computer Science, Dalhousie University
- 11. The Francis Crick Institute
Description
Nextclade 3.1.0
CLI
PCR primers are back in Nextclade CLI
Due to popular demand, we are bringing back --input-pcr-primers argument for Nextclade CLI, which accepts a path to primers.csv file. The feature works just like it did prior to release of Nextclade v3, except primers.csv is never read from a dataset - you always need to provide it separately. At the same time, we removed support for primers field from pathogen.json, because it was too difficult to make a correct JSON object and it would conflict with the primers provided with --input-pcr-primers.
Web
Fix results table stripes
Results table stripes are always alternating now, regardless of sorting and filtering applied. This is only a visual change and does not affect any functionality.
Instructions
📥 Nextclade CLI & Nextalign CLI can be downloaded from the links in the "Assets" section just below. Click "Show all" at the bottom of the "Assets" section to show more download options. Note the difference between "nextalign" and "nextclade" files as well as differences in operating systems and computer architectures.
🌐 Nextclade Web is available at https://clades.nextstrain.org
🐋 Docker images are available at DockerHub
📚 To understand how it all works, make sure to read the Documentation
Files
nextstrain/nextclade-3.1.0.zip
Files
(23.3 MB)
| Name | Size | Download all |
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md5:1413156163886164be5874285490f843
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23.3 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/nextstrain/nextclade/tree/3.1.0 (URL)