nf-core
Published February 1, 2024 | Version 3.2.2
Software Open

nf-core/cutandrun: A Nextflow pipeline for the analysis of CUT&RUN, CUT&Tag and TIP-seq datasets

Authors/Creators

  • 1. ROR icon The Francis Crick Institute
  • 2. EDMO icon European Molecular Biology Laboratory - European Bioinformatics Institute
  • 3. EDMO icon Okinawa Institute of Science and Technology

Description

[3.2.2] - 2024-02-01

Enhancements

  • Updated pipeline template to nf-core/tools 2.12.
  • Added option to dump calculated scale factor values from the pipeline using --dump_scale_factors
  • Added options to group IGV tracks by samplesheet group or by file type using --igv_sort_by_groups

Fixes

  • Fixed error that caused mismapping of IgG controls to their targets in certain samplesheet configurations.

Files

nf-core/cutandrun-3.2.2.zip

Files (3.9 MB)

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md5:5a9ee3804a16ed9055fc0e52fa548946
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/cutandrun/tree/3.2.2 (URL)