Published January 27, 2024 | Version v1
Image Open

CZI files showing problems in BioFormats 6.9 and QuPath

Authors/Creators

Description

Axioscan images do not open correctly in QuPath or FIJI when they were processed beforehand in Zen. The original unprocessed images can be opened in QuPath or FIJI without any problems.

 

Unprocessed image:


 

Processed image (background substraction):


 

The problem occured on the customer system with Zen 3.1 but we see this also in Zen 3.9.0!

 

 

Files

Files (4.7 GB)

Name Size
md5:53ab438e1530aeb02cb920ddebc0bf08
2.1 GB Download
md5:5e30aec7350fbf06cd59337f2938f036
2.1 GB Download
md5:ea07f6c8acd8a37cd30e37472ce4e3aa
505.5 MB Download