Methods
GENERAL INFORMATION
1. Dataset used for the article: Saffron-cowled Blackbirds' reduced nest success in Argentina's agricultural land highlights the importance of non-agricultural habitat for its conservation.
2. Study published in Ornithological Applications by Pucheta, M.F; Pereda, M.I, and Di Giacomo, A.S.
Corresponding author email: pucheta.mf@gmail.com
Correspondig author institution: Centro de Ecología Aplicada del Litoral, CONICET.
3. Date of data collection: 2015-2019
4. Geographic location of data collection: Argentina (Entre Ríos and Corrientes provinces).
For specific data collection methods please reefer to method section of the manscript in the DOI: 10.1093/ornithapp/duae006. Journal: The Condor: Ornithological Applications
5. Information about funding sources that supported the collection of the data: PICT2014–3397, PICT2014–2057, PIP2022-2024, Neotropical Bird Club, Neotropical Grassland Conservancy, The Rufford Fundation, Young Conservation Leadership Program from BirdLife International and Aves Argentinas.
SHARING/ACCESS INFORMATION
1. Licenses/restrictions placed on the data: CC0 1.0 Universal (CC0 1.0) Public Domain
2. Links to publications that cite or use the data: Pucheta, Maria Florencia; Pereda, Maria Inés; Di Giacomo, Adrián Santiago (Forthcoming 2024). Saffron-cowled Blackbirds' reduced nest success in Argentina's agricultural land highlights the importance of non-agricultural habitat for its conservation. Ornithological Applications.
3. Links to other publicly accessible locations of the data: None
4. Links/relationships to ancillary data sets: None
5. Was data derived from another source? No
A. If yes, list source(s): NA
6. Recommended citation for this dataset:
Pucheta, Maria Florencia; Pereda, Maria Inés; Di Giacomo, Adrián Santiago (Forthcoming 2024).
Data from: Saffron-cowled Blackbirds' reduced nest success in Argentina's agricultural land highlights the importance of non-agricultural habitat for its conservation.
Dryad Digital Repository. <https://doi.org/10.5061/dryad.4mw6m90hw>
DATA & FILE OVERVIEW
1. File List (nomenclature: abbreviated name of Xanthopsar flavus (xafl) + parameters presented in the datase)
A) xafl_Nest_Height.xlsx
B) xafl_Brood_parasitism.xlsx
C) xafl_Reproductive_Parameters.xlsx
D) xafl_Nest_Failure_Causes.xlsx
E) xafl_Nest_Survival_for_Mark.xlsx
F) xafl_Nest_Attempts.xlsx
G) xafl_Nest_survival_across_Breeding_Season.xlsx
H) xafl_Nest_Survival_and_Brood_Parasitism_Graphs
A) DATA-SPECIFIC INFORMATION FOR: xafl_Nest_Height.xlsx
1. Number of variables: 2
2. Number of cases/rows: 222
3. Variable List:
* breeding_habitat: the five breeding habitat studied (marsh, roadside, hedgerow, grazed_paddock, cropland)
* nest_height: height in centimeters at which each of the nests was constructed.
4. Missing data codes: None
B) DATA-SPECIFIC INFORMATION FOR: xafl_Brood_parasitism.xlsx
1. Number of variables: 3
2. Number of cases/rows: 223
3. Variable List:
* nest_ID:the identity of each nest.
* BreedingHabitat: the five breeding habitat analyzed (marsh, roadside, hedgerow, grazed_paddock, cropland)
* BroodParasitism: binary variable: presence (1) or absence (0) of brood parasitism in each nest.
4. Missing data codes: None
C) DATA-SPECIFIC INFORMATION FOR: xafl_Reproductive_Parameters.xlsx
1. Number of variables: 9
2. Number of cases/rows: 107
3. Variable List:
* Hatching_success:Hatching success per nest (number of eggs hatched over the total number of eggs laid).
* Breeding_habitat_HS: reproductive habitats types for nests with information on hatching success(marsh, roadside, hedgerow, grazed_paddock, cropland).
* Year_HS: the corresponding year (2015-2019) of the breeding season for which hatching success was calculated.
* Clutch_size:clutch size (number of eggs) per nest.
* Breeding_habitat_CS: reproductive habitats types for nests with information on clutch size.
* Year_CS: the corresponding year (2015-2019) of the breeding season for which clutch size was calculated.
* Fledgling_success: fledging success for each nest (chicks that successfully flew from the nest over total chicks present in the nest).
* Breeding_habitat_FS: reproductive habitats types for nests with information on fledgling success.
* Year_FS: the corresponding year (2015-2019) of the breeding season for which fledgling success.
4. Missing data codes: rows with "n/a" for nests with some parameter data not available.
D) DATA-SPECIFIC INFORMATION FOR: xafl_Nest_Failure_Causes.xlsx
1. Number of variables: 2
2. Number of cases/rows: 168
3. Variable List:
* BreedingHabitat: the five breeding habitat analyzed (marsh, roadside, hedgerow, grazed_paddock, cropland).
* FailureCause: the causes that led to failure in each nest (depredated, parasitated, trampling, abandonment, storms).
4. Missing data codes: None
E) DATA-SPECIFIC INFORMATION FOR: xafl_Nest_Survival_for_Mark.xlsx
1. Number of variables: 17
2. Number of cases/rows: 223
3. Variable List:
* NestID: nest identity number
* FirstFound: Julian day of the encounter date.
* LastCheck: Julian day of the last date of the nest with contents.
* Fate: Final status of the nest: successful (0) or failed (11).
* NestAge: Days elapsed since the laying of the first egg on day 0.
* year2015: Dummy variable for the year 2015 (nest of 2015 season are 1, nest from another seadon are 0).
* year2016: Dummy variable for the year 2016 (nest of 2016 season are 1, nest from another seadon are 0).
* year2017: Dummy variable for the year 2017 (nest of 2017 season are 1, nest from another seadon are 0).
* year2018: Dummy variable for the year 2018 (nest of 2018 season are 1, nest from another seadon are 0).
* Roadside:Dummy variable for the roadside habitat.
* Hedgerow: Dummy variable for the hedgerow habitat.
* GrazedPaddock: Dummy variable for the grazed paddock habitat.
* Cropland: Dummy variable for the cropland habitat.
* BroodParasitism: Binary variable for brood parasitism presence.
* NestHeight: cuantitative variable measured as nest height in cm.
* ColonySize: The number of total nest in the colony.
4. Missing data codes: None.
This dataset (E) is for Daily survival rate estimations in the software Mark, tool "Nest survival"
F) DATA-SPECIFIC INFORMATION FOR: xafl_Nest_Attempts.xlsx
1. Number of variables: 4
2. Number of cases/rows: 8
3. Variable List:
* TimeOfBreeding: The progression of the breeding season expressed in fortnights.
* TimeOfBreeding_name: The name assigned to each fortnight on the x-axis of the graph.
* n: The number of nest attempts per fortnigh.
* PercentageNestAttemps: The percentage of nest attempts per fortnight relative to the total nest attempts.
4. Missing data codes: None.
This dataset (F) was used to plot nest attempts against the progression of the breeding season.
G) DATA-SPECIFIC INFORMATION FOR: xafl_Nest_survival_across_Breeding_Season.xlsx
1. Number of variables: 417
2. Number of cases/rows: 124
3. Variable List:
* Breeding_time: Progression of the breeding season in days.
* Daily_survival_rate: Daily survival rate calculated with MARK for each day within the breeding season.
* LCI:Lower confidence interval of the daily survival rate.
* UCI:Upper confidence interval of the daily survival rate.
4. Missing data codes: None
The present dataset (G) was used to plot the daily survival rate against the quadratic trend of the breeding time.
H) DATA-SPECIFIC INFORMATION FOR: xafl_Nest_Survival_and_Brood_Parasitism_Graphs.xlsx
1. Number of variables: 7
2. Number of cases/rows: 5
3. Variable List:
* Environment: the five reroductive habitat analyzed (marshes, native hedgerow, croplands, roadside ditches and grazed paddocks).
*Daily_survival_rate: the daily nest survival rate for the model that considers the habitat type variable.
*Estandar_error: standard error for the daily survival rate (DSR) in each habitat type.
* LCI: lower confidence interval for the DSR in each habitat type.
* UCI: upper confidence interval for the DSR in each habitat type.
* Brood_parasitism: the percentage of nests parasitized by habitat type.
* order: the order in which the data were plotted.
The present dataset (H) was used to plot the daily survival rate and brood parasitism percentage against breeding habitat type.