Published April 3, 2023
| Version v5
Journal article
Open
ATR phosphoproteomics
Authors/Creators
- Jadav, Rathan S1
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Weiland, Florian2
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Carroll, Thomas1
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Gao, Yuandi3
- Wang, Jianming1
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Zhou, Houjiang4
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Lamoliatte, Frederic1
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Muñoz, Ivan1
- Toth, Rachel1
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Macartney, Thomas1
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van Attikum, Haico5
- Brown, Fiona1
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Hastie, James1
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Alabert, Constance6
- Zenke, Frank7
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Noordermeer, Sylvie8
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Masson, Jean-Yves3
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Rouse, John1
- 1. MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK
- 2. MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK; Department of Microbial and Molecular Systems (M2S), Centre for Food and Microbial Technology (CLMT), Laboratory of Enzyme, Fermentation and Brewing Technology (EFBT), Technology Campus Ghent, Ghent, Belgium
- 3. CHU de Quebec Research Center,Oncology Division, Dept. of Molecular Biology, Medical Biochemistry and Pathology, Laval University Cancer Research Center, 9 McMahon Drive, Quebec Cit, QC G1R 3S3, Canada
- 4. MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK; HISUN Research Institute, Zhejiang HISUN Pharmaceutical Co. Ltd, 46 Waisha Rd., Taizhou City, Zhejiang Province, China
- 5. Dept of Human Genetics, Leiden University Medical Center, Einthovenweg 20, 2333 ZC Leiden, Netherlands
- 6. Division of Molecular, Cell and Developmental Biology, School of Life Sciences, Wellcome Trust Biocentre, University of Dundee, DD1 5EH, UK
- 7. EMD Serono, Research Unit Oncology, EMD Serono, Billerica, MA, USA
- 8. Dept of Human Genetics, Leiden University Medical Center, Einthovenweg 20, 2333 ZC Leiden, Netherlands, Oncode Iinstitute, Utrecht, The Netherlands
Description
R scripts used in the publication for the analysis of the phospho-proteomics dataset.
Annotated spectra of phosphopeptides affected by inhibitors provided as .zip file (5,222 files as .png). Spectra annotated using PDV 1.8.2 (Li et al., Bioinformatics, 2019; 35(7); 1249-1251 (10.1093/bioinformatics/bty770))
Files
Annotated_Phosphopeptides_Inhibitor_affected.zip
Files
(42.7 MB)
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