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Published April 3, 2023 | Version v5
Journal article Open

ATR phosphoproteomics

Authors/Creators

  • 1. MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK
  • 2. MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK; Department of Microbial and Molecular Systems (M2S), Centre for Food and Microbial Technology (CLMT), Laboratory of Enzyme, Fermentation and Brewing Technology (EFBT), Technology Campus Ghent, Ghent, Belgium
  • 3. CHU de Quebec Research Center,Oncology Division, Dept. of Molecular Biology, Medical Biochemistry and Pathology, Laval University Cancer Research Center, 9 McMahon Drive, Quebec Cit, QC G1R 3S3, Canada
  • 4. MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK; HISUN Research Institute, Zhejiang HISUN Pharmaceutical Co. Ltd, 46 Waisha Rd., Taizhou City, Zhejiang Province, China
  • 5. Dept of Human Genetics, Leiden University Medical Center, Einthovenweg 20, 2333 ZC  Leiden, Netherlands
  • 6. Division of Molecular, Cell and Developmental Biology, School of Life Sciences, Wellcome Trust Biocentre, University of Dundee, DD1 5EH, UK
  • 7. EMD Serono, Research Unit Oncology, EMD Serono, Billerica, MA, USA
  • 8. Dept of Human Genetics, Leiden University Medical Center, Einthovenweg 20, 2333 ZC  Leiden, Netherlands, Oncode Iinstitute, Utrecht, The Netherlands

Description

R scripts used in the publication for the analysis of the phospho-proteomics dataset.

Annotated spectra of phosphopeptides affected by inhibitors provided as .zip file (5,222 files as .png). Spectra annotated using PDV 1.8.2 (Li et al., Bioinformatics, 2019; 35(7); 1249-1251 (10.1093/bioinformatics/bty770))

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Annotated_Phosphopeptides_Inhibitor_affected.zip

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