Published January 31, 2024
| Version 2.0.0
Dataset
Open
Library size confounds biology in spatial transcriptomics data
Authors/Creators
- 1. SAiGENCI, The University of Adelaide
- 2. WEHI
-
3.
The University of Adelaide
-
4.
The University of Melbourne
Description
This dataset contains annotated sub-cellular localised spatial measurements from the Visium, Xenium and CosMx platforms. Specifically, it includes datasets analysed in the publication Bhuva et. al, 2023 titled "Library size confounds biology in spatial transcriptomics data". Raw transcript detections are presented. Data is best accessed through the accompanying SubcellularSpatialData R/Bioconductor package. Region files used to annotate individual transcript detections are presented in the form of GeoJSON files.
Files
IDC.geojson
Files
(11.1 GB)
| Name | Size | |
|---|---|---|
|
md5:d4cb6f014bb3129a35128703e4df7005
|
2.6 GB | Download |
|
md5:01dc5d6edc4993a4ee3ea629f62b9d5a
|
2.0 MB | Preview Download |
|
md5:5b0a37579eff27725c04b58fa3077dbb
|
805.9 kB | Preview Download |
|
md5:754054d06a11e09f3eebe0e9900a2d41
|
611.9 kB | Download |
|
md5:b53f33b1f86018963077bfaaf3e9ae02
|
391.4 kB | Download |
|
md5:d3336886039442c94057c7f0cd6bb682
|
581.7 kB | Download |
|
md5:0c18d615c5bf39dd146b06697bcfcf02
|
644.9 kB | Download |
|
md5:37b00827bab5f7b352577977905a2b31
|
592.1 kB | Download |
|
md5:46c610de5bf72e3d3d3ce48fc368c7ac
|
592.8 kB | Download |
|
md5:6ff7a22c55418a61ab57b3ccf910680a
|
531.0 kB | Download |
|
md5:bb4c20359d5e44a6dab499de202db818
|
1.1 GB | Download |
|
md5:cef3970d373e1a6965e439e0b01043fe
|
967.8 kB | Download |
|
md5:0de8a1a78ca574ff05c6524a83e2e995
|
3.2 GB | Download |
|
md5:32d04042fbfbf82282f81bfedbc20647
|
4.2 GB | Download |
|
md5:377ec487d401bb3698e36f85aaac6b5b
|
1.3 MB | Download |
|
md5:21fbe2f769925374ef5346161b512553
|
1.3 MB | Download |
|
md5:5c8fdc0db058841de0aec37d499216b7
|
1.3 MB | Download |