Biodiversity Literature Repository

Submit to community
Liberated Data
Published December 31, 2022 | Version v1
Journal article Restricted

A molecular phylogeny of Calenduleae (Asteraceae) supports the transfer of Dimorphotheca polyptera DC. to Osteospermum L.

Authors/Creators

Description

Sadler, Robert, Parker, Thaabiet, Verboom, George Anthony, Ellis, Allan G., Jackson, Mariëtte, van Zyl, Juanita, Manning, John, Bergh, Nicola G. (2022): A molecular phylogeny of Calenduleae (Asteraceae) supports the transfer of Dimorphotheca polyptera DC. to Osteospermum L. South African Journal of Botany 151: 234-245, DOI: 10.1016/j.sajb.2022.09.001, URL: http://dx.doi.org/10.1016/j.sajb.2022.09.001

Files

Restricted

The record is publicly accessible, but files are restricted. <a href="https://zenodo.org/account/settings/login?next=https://zenodo.org/records/10496950">Log in</a> to check if you have access.

Linked records

Additional details

Identifiers

URL
https://www.checklistbank.org/dataset/286254
LSID
urn:lsid:plazi.org:pub:4522BC47571AE369FFF61261FF933131
URL
http://publication.plazi.org/id/4522BC47571AE369FFF61261FF933131

Cites
Publication: 10.12705/Code.2018.RegnumVegetabile159 (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.10564921 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/B91BC43F5713E360FF9213B1FE5233CA (URL)
Taxonomic treatment: 10.5281/zenodo.10564923 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/B91BC43F5713E363FF92117FFDB431FC (URL)
Taxonomic treatment: 10.5281/zenodo.10564925 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/B91BC43F5710E363FF921349FF6D36F7 (URL)
Taxonomic treatment: 10.5281/zenodo.10564927 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/B91BC43F5710E363FCA7108BFA5E3263 (URL)
Figure: 10.5281/zenodo.10496952 (DOI)
Dataset: 10.5281/zenodo.15139953 (DOI)
Dataset: 10.5281/zenodo.15139955 (DOI)
Figure: 10.5281/zenodo.10496958 (DOI)
Figure: 10.5281/zenodo.10496960 (DOI)
Figure: 10.5281/zenodo.10496962 (DOI)
Is source of
Dataset: https://www.gbif.org/dataset/b979eeca-d31d-4aff-b189-e359e000db46 (URL)

References

  • Akaike, H., 1973. Information theory and an extension of the maximum likelihood principle. In: Petrov, B.N., Csaki, B.F. (Eds.), Second International Symposium on Information Theory. Academiai Kiado, Budapestpp. 267-281.
  • Barclay, A.S., Earle, F.R., 1965. The search for new industrial crops V. The South African Calenduleae (Compositae) as a source of new oil seeds. Econ. Bot. 19, 33-43.
  • Barker, N.P., Howis, S., Nordenstam, B., K€ allersj€ o, M., Elden€ as, P., Griffioen, C., Linder, H.P., 2009. Nuclear and chloroplast DNA-based phylogenies of Chrysanthemoides Tourn. ex Medik. (Calenduleae; Asteraceae) reveal extensive incongruence and generic paraphyly, but support the recognition of infraspecific taxa in C. monilifera. S. Afr. J. Botany 75, 560-572.
  • Barker, N.P., Paterson, I., Howis, S., 2015. "Barcoding" and ISSR data illuminate a problematic infraspecific taxonomy for Chrysanthemoides monilifera (Calenduleae; Asteraceae): lessons for biocontrol of a noxious weed. Biochem. Syst. Ecol. 61, 541-551.
  • Blattner, F., 1999. Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR. BioTechniques 27, 1180-1186.
  • Candolle, A.P., 1838. Prodromus Systematis Naturalis Regni Vegetabilis VI. Treuttel et W urtz € , Paris.
  • Chisholm, M.J., Hopkins, C.Y., 1967. Calendic acid in seed oils of the genus Calendula. Can. J. Biochem. 45 (2) 2510-254.
  • Doyle, J., Doyle, J., 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11-15.
  • Earle, F.R., Wolff, I.A., Glass, C.A., Jones, Q., 1962. Search for new industrial oils. VII. J. Americal Oil Chemist. Soc. 39, 381-383.
  • Edgar, R.C., 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl. Acid. Res. 32 (5), 1792-1797.
  • Felsenstein, J., 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 (6), 368-376.
  • Funk, V.A., Bayer, R.J., Keeley, S., Chan, R., Watson, L., Gemeinholzer, B., Schilling, E., Panero, J.L., Baldwin, B.G., Garcia-Jacas, N., Susanna, A., Jansen, R.K., 2005. Everywhere but Antarctica: using a supertree to understand the diversity and distribution of the Compositae. Biologiske Skrifter 55, 343-374.
  • Goncalves ¸, A.C., Castro, S., Paiva, J., Santos, C., Silveira, P., 2018. Taxonomic revision of the genus Calendula (Asteraceae) in the Iberian Peninsula and the Balearic Islands. Phytotaxa 352 (1), 001-091.
  • Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acid. Symp. Ser. 41, 95-98.
  • Harte, N., Silventoinen, V., Quevillon, E., Robinson, S., Kallio, K., Fustero, X., Patel, P., Jokinen, P., Lopez, R., 2004. Public web-based services from the European Bioinformatics Institute. Nucl. Acid. Res. 32, W3-W9.
  • Harvey, W.H., 1865. Compositae. in: Harvey, W.H., Sonder, O.W. (Eds) Flora Capensis. Hodges, Smith & Co., Dublin, pp. 44-530. vol. 3.
  • Kalyaanamoorthy, S., Quang Minh, B., Wong, T.K.F., von Haeseler, A., Jermiin, L.S., 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat. Method. 14, 587-589.
  • Linnaeus, C., 1753. Species Plantarum, 2. Laurentii Salvii, Holmiae (Stockholm).
  • Manning, J.C., Goldblatt, P., 2012. Plants of the greater cape floristic region 1: the core cape flora. Strelitzia 29, SANBI, Pretoria.
  • Meikle, R.D., 1976. Calendula L. In: Tutin, T.G., Heywood, V.H., Burges, N.A., Valentine, D.H., Walters, S.M., Webb, D.A. (Eds.), Flora Europaea Notulae Systematicae ad Floram Europaeam Spectantes. Cambridge University Press, Cambridge, pp. 206-207.
  • McLean, J., Clark, A.H., 1956. Isolation of octadec-8, 10, 12-trienoic acid from marigold seed oil. J. Chem. Soc. 777-778.
  • Nordenstam, B., 1994a. Tribe Calenduleae. In: Bremer, K. (Ed.), Asteraceae: Cladistics and Classification. Timber Press, Portland, pp. 365-376.
  • Nordenstam, B., 1994b.New combinations in the Calenduleae.Compos.Newsl.25, 46-49.
  • Nordenstam, B., 1996. Recent revision of Senecioneae and Calenduleae systematics. in Hind, D.J.N., Beentje, H.H. (Eds.) Compositae Systematics, Proceedings of the International Compositae Conference, Kew, 1994. Kew. Royal Botanic Gardens, pp. 591-596.
  • Nordenstam, B., K€ allersj€ o, M., Elden€ as, P., 2006. Nephrotheca, a new monotypic genus of the Compositae-Calenduleae from the southwestern Cape Province. Compos. Newsl. 44, 32-37.
  • Nordenstam, B., 2006. Generic revisions in the tribe Calenduleae (Compositae). Compos. Newsl. 44, 38-49.
  • Nordenstam, B., K€ allersj o €, M., 2009. Calenduleae. In: Funk, V.A., Susanna, A., Stuessy, T.F., Bayer, R.J. (Eds.), Systematics, Evolution and Biogeography of Compositae. IAPT, Vienna, pp. 527-538.
  • Norlindh, T., 1943. Studies in the Calenduleae I. Monograph of the Genera Dimorphotheca, Castalis, Osteospermum,Gibbaria and Chrysanthemoides. C. W.K.Gleerup, Lund.
  • Norlindh, T., 1954. Further contributions to the genus Osteospermum. Svensk Botanisk Tidskrift 48 (1), 148-154.
  • Norlindh, T., 1957. Contributions to the knowledge of Dimorphotheca montana T. Norl. Botaniska Notiser 110 (2), 141-150.
  • Norlindh, T., 1960. Additions to the monograph on Osteospermum. Botaniska Notiser 113 (4), 385-399.
  • Norlindh, T., 1965. Zur Kenntnis der Calenduleae in S€ udwestafrika. Mitteilungen der Botanischen Staatssammlung M unchen € 5, 645-651.
  • Norlindh, T., 1978. Ch. 34: calenduleae -systematic review. In: Heywood, V.H., Harborne, J.B., Turner, B.L. (Eds.), Biology and Chemistry of the Compositae. Academic Press, Cornell, pp. 961-987.
  • Norlindh, T., 1980. Dimorphotheca venusta (T. Norl.) T. Norl. stat. nov. and additional notes on D. montana T. Norl. (Compositae). Botaniska Notiser 133, 559-563.
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D., Darling, A., H€ ohna, S., Larget, B., Liu, L., Suchard, M.A., Huelsenbeck, J.P., 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61, 539-542.
  • Ronquist, F., Huelsenbeck, J.P., Teslenko, M., Zhang, C., Nylander. J.A., 2020. MrBayes version 3.2 manual: tutorials and model summaries. Distributed with the software from https://github.com/NBISweden/MrBayes.
  • Sadler, R., 2019. Whoopsie Daisy: Revisiting the Taxonomy of Calenduleae on a Novel Phylogeny. Department of Biological Sciences, University of Cape Town, South Africa. Unpublished BSc(Hons) thesis.
  • Schmiderer, C., Lukas, B., Ruzicka, J., Novak, J., 2015. DNA-based identification of Calendula of fi cinalis (Asteraceae). Appl. Plant. Sci. 3 (11), 1500069.
  • Simmons, M.P., Ochoterena, H., 2000. Gaps as characters in sequence-based phylogenetic analysis. Syst. Biol. 49 (2), 369-381.
  • Smith, Jr., C.R., Wilson, T.L., Melvin, E.H., Wolff, I.A., 1960. Dimorphecolic acid - a unique hydroxydienoid fatty acid. J. Am. Chem. Soc. 83 (6), 1417-1421.
  • Swelankomo, N., 2013. FSA contribution 22: Asteraceae: Calenduleae: Garuleum. Bothalia 43 (2), 167-178.
  • Swofford, D.L., 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
  • Taberlet, P., Gielly, L., Pautou, G., Bouvet, J., 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant. Mol. Biol. 17, 1105-1109.
  • Tavare, S., 1986. Some probabilistic and statistical problems in the analysis of DNA sequences. Lect. Math. Life Sci. 17, 57-86.
  • Turland, N.J., Wiersema, J.H., Barrie, F.R., Greuter, W., Hawksworth, D.L., Herendeen, P. S. (Eds.), 2018. International Code of Nomenclature for algae, fungi, and Plants (Shenzhen Code) Adopted By the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Koeltz Botanical Books, Glash utten € . https://doi.org/ 10.12705/Code.2018. Regnum Vegetabile 159.
  • van Zyl, J., 2013. The Systematics of the Genus Garuleum Cass. (Asteraceae). Department of Plant Sciences, University of the Free State, Bloemfontein, South Africa. Unpublished MSc thesis.
  • Watson, L.E., Siniscalchi, C.M., Mandel, J., 2020. Phylogenomics of the hyperdiverse daisy tribes: Anthemideae, Astereae, Calenduleae, Gnaphalieae and Senecioneae. J. Syst. Evol. 58 (6), 841-852.
  • White, T.J., Bruns, T., Lee, S., Taylor, J., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M., Gelfand, D., Sninsky, J., White, T. (Eds.), PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, California, pp. 315-322.
  • Yang, Z., 1993. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 19, 1396-1401.
  • Young, N., Healy, J., 2003. GAPCODER automates the use of indel characters in phylogenetic analysis. BMC Bioinform. 4 (1), 6.