Published January 11, 2024
| Version v1
Software
Open
Source code for HATCHet2 related to publication "HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data"
Authors/Creators
- 1. The Francis Crick Institute
- 2. University College London
- 3. Princeton University
Description
Source code for method HATCHet2 which infers copy-number variations form multiple bulk sequencing samples.
Zip file "hatchet-2.0.0" contains the source code used to generate results for the initial submission and bioRxiv preprint.
Zip file "revisions" contains the source code used to generate updated results for the 10x dataset, multi-sample MASCoTE simulated data, single-sample MASCoTE simulated data, and new simulations.
See HATCHet repository for the current version of the software and documentation: https://github.com/raphael-group/hatchet
See the HATCHet2 publication repository for the most recent version of all results and parameter settings: https://github.com/raphael-group/hatchet2-paper/
Files
hatchet-2.0.0.zip
Files
(229.2 MB)
| Name | Size | Download all |
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md5:2412b25c44b79efe7c5100d8137a7844
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89.6 MB | Preview Download |
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md5:892cdf8edf119e4f8e4e2edfe3059073
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139.6 MB | Preview Download |
Additional details
Additional titles
- Alternative title
- HATCHet2 publication source code
Related works
- Is metadata for
- Preprint: 10.1101/2023.07.13.548855 (DOI)