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Published October 31, 2014 | Version v1
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Analyses of flooding tolerance of soybean varieties at emergence and varietal differences in their proteomes

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  • 1. NARO Institute of Crop Science, Tsukuba 305-8518, Japan

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Nanjo, Yohei, Jang, Hee-Young, Kim, Hong-Sig, Hiraga, Susumu, Woo, Sun-Hee, Komatsu, Setsuko (2014): Analyses of flooding tolerance of soybean varieties at emergence and varietal differences in their proteomes. Phytochemistry 106: 25-36, DOI: 10.1016/j.phytochem.2014.06.017, URL: http://dx.doi.org/10.1016/j.phytochem.2014.06.017

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urn:lsid:plazi.org:pub:4571FFD86737FFE3FFFBCB0AD2321A77

Cites
Publication: 10.1111/pce.12277 (DOI)
Has part
Figure: 10.5281/zenodo.10489658 (DOI)
Figure: 10.5281/zenodo.10489660 (DOI)
Figure: 10.5281/zenodo.10489662 (DOI)
Figure: 10.5281/zenodo.10489664 (DOI)
Figure: 10.5281/zenodo.10489666 (DOI)

References

  • Boru, G., Vantoai, T., Alves, J., Hua, D., Knee, M., 2003. Responses of soybean to oxygen deficiency and elevated root-zone carbon dioxide concentration. Ann. Bot. 91, 447-453.
  • Branco-Price, C., Kaiser, K.A., Jang, C.J.H., Larive, C.K., Bailey-Serres, J., 2008. Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant J. 56, 743- 755.
  • Chida, H., Kokuryu, T., Shimada, S., 2009. The storage method for maintaining germination ability of moisture-adjucted soybean seeds. Jpn. J. Crop Sci. 78, 219-224.
  • Cho, J.W., 2013. Differences in flood-stress tolerance among sprout soybean cultivars. Korean J. Crop Sci. 58, 190-195.
  • Cornelious, B., Chen, P., Chen, Y., de Leon, N., Shannon, J.G., Wang, D., 2005. Identification of QTLs underlying water-logging tolerance in soybean. Mol. Breed. 16, 103-112.
  • Gibbs, J., Greenway, H., 2003. Mechanisms of anoxia tolerance in plants. I. Growth, survival and anaerobic catabolism. Funct. Plant Biol. 30, 1-47.
  • Grainger, R.J., Beggs, J.D., 2005. Prp8 protein: at the heart of the spliceosome. RNA 11, 533-557.
  • Hashiguchi, A., Sakata, K., Komatsu, S., 2009. Proteome analysis of early-stage soybean seedlings under flooding stress. J. Proteome Res. 8, 2058-2069.
  • Jackson, M.B., Colmer, T.D., 2005. Response and adaptation by plants to flooding stress. Ann. Bot. 96, 501-505.
  • Kim, C.Y., Bove, J., Assmann, S.M., 2008. Overexpression of wound-responsive RNAbinding proteins induces leaf senescence and hypersensitive-like cell death. New Phytol. 180, 57-70.
  • Kokuryu, T., Chida, H., Shimada, S., Kato, S., Hamaguchi, H., Tazawa, J., 2010. Effects of soil surface intensity and soil microorganisms on emergence and establishment of moisture-adjusted soybean seeds. Jpn. J. Crop Sci. 79, 476-483.
  • Komatsu, S., Han, C., Nanjo, Y., Altaf-Un-Nahar, M., Wang, K., He, Dongli, Yang, P., 2013a. Label-free quantitative proteomic analysis of abscisic acid effect in early-stage soybean under flooding. J. Proteome Res. 8, 4766-4778.
  • Komatsu, S., Nanjo, Y., Nishimura, M., 2013b. Proteomic analysis of the flooding tolerance mechanism in mutant soybean. J. Proteomics 79, 231-250.
  • Komatsu, S., Yamamoto, R., Nanjo, Y., Mikami, Y., Yunokawa, H., Sakata, K., 2009. A comprehensive analysis of the soybean genes and proteins expressed under flooding stress using transcriptome and proteome techniques. J. Proteome Res. 8, 4766-4778.
  • Lambermon, M.H.L., Fu, Y., Wieczorek Kirk, D.A., Dupasquier, M., Filipowicz, W., Lorkovic, Z.J., 2002. UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants. Mol. Cell. Biol. 22, 4346-4357.
  • Lambermon, M.H.L., Simpson, G.G., Wieczorek Kirk, D.A., Hemmings-Mieszczak, M., Klahre, U., Filipowicz, W., 2000. UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation. EMBO J. 19, 1638-1649.
  • Min, S.K., Zhang, X., Zwiers, F.W., Hegerl, G.C., 2011. Human contribution to moreintense precipitation extremes. Nature 470, 378-381.
  • Mommer, L., Lenssen, J.P.M., Huber, H., Visser, E.J.W., Kroon, H.D., 2006. Ecophysiological determinants of plant performance under flooding: a comparative study of seven plant families. J. Ecol. 94, 1117-1129.
  • Nabben, R.H.M., Blom, C.W.P.M., Voesenek, L.A.C.J., 1999. Resistance to complete submergence in Rumex species with different life histories: the influence of plant size and light. New Phytol. 144, 313-321.
  • Nakamura, T., Yamamoto, R., Hiraga, S., Nakayama, N., Okazaki, K., Takahashi, H., Uchimiya, H., Komatsu, S., 2012. Evaluation of metabolite alteration under flooding stress in soybeans. Jpn. Agric. Res. Q. 46, 237-248.
  • Nakayama, N., Hashmoto, S., Shimada, S., Takahashi, M., Kim, Y.H., Oya, T., Arihara, J., 2004. The effect of flooding stress at the germination stage on the growth of soybean in relation to initial seed moisture content. Jpn. J. Crop Sci. 73, 323- 329.
  • Nakayama, N., Shimada, S., Takahashi, M., Kim, Y.H., Arihara, J., 2005. Effects of water-absorbing rate of seed on flooding injury in soybean. Jpn. J. Crop Sci. 74, 325-329.
  • Nanjo, Y., Maruyama, K., Yasue, H., Yamaguchi-Shinozaki, K., Shinozaki, K., Komatsu, S., 2011. Transcriptional responses to flooding stress in roots including hypocotyl of soybean seedlings. Plant Mol. Biol. 77, 129-144.
  • Nanjo, Y., Nakamura, T., Komatsu, S., 2013. Identification of indicator proteins associated with flooding injury in soybean seedlings using label-free quantitative proteomics. J. Proteome Res. 12, 4785-4798.
  • Nanjo, Y., Skultety, L., Uvackova, L., Klubicova, K., Hajduch, M., Komatsu, S., 2012. Mass spectrometry-based analysis of proteomic changes in the root tips of flooded soybean seedlings. J. Proteome Res. 11, 372-385.
  • Oosterhuis, D.M., Scott, H.D., Hampton, R.E., Wullschleger, S.D., 1990. Physiological responses of two soybean [Glycine max L. Merr] cultivars to short term flooding. Environ. Exp. Bot. 30, 85-92.
  • Pall, P., Aina, T., Stone, D., Stott, P.A., Nozawa, T., Hilberts, A.G.J., Lohmann, D., Allen, M.R., 2011. Anthropogenic greenhouse gas contribution to flood risk in England and Wales in autumn 2000. Nature 470, 382-385.
  • Russell, D.A., Wong, D.M.L., Sachs, M.M., 1990. The anaerobic responses of soybean. Plant Physiol. 92, 401-407.
  • Sayama, T., Nakazaki, T., Ishikawa, G., Yagasaki, K., Yamada, N., Hirota, N., Hirata, K., Yoshikawa, T., Saito, H., Teraishi, M., Okumoto, Y., Tsukiyama, T., Tanisaka, T., 2009. QTL analysis of seed-flooding tolerance in soybean Glycine max [L.] Merr. Plant Sci. 176, 514-521.
  • Schiermeier, Q., 2011. Increased flood risk linked to global warming. Nature 470, 316.
  • Schmutz, J., Cannon, S.B., Schlueter, J., Ma, J., Mitros, T., Nelson, W., Hyten, D.L., Qijian Song, Q., Thelen, J.J., et al., 2010. Genome sequence of the palaeopolyploid soybean. Nature 46, 178-183.
  • Tamang, B.G., Magliozzi, J.O., Maroof, M.A.S., Fukao, T., 2014. Physiological and transcriptomic characterization of submergence and reoxygenation responses in soybean seedlings. Plant, Cell Environ.. http://dx.doi.org/10.1111/pce.12277.
  • Tzafrir, I., Pena-Muralla, R., Dickerman, A., Berg, M., Rogers, R., Hutchens, S., Sweeney, T.C., McElver, J., Aux, G., Patton, D., Meinke, D., 2004. Identification of genes required for embryo development in Arabidopsis. Plant Physiol. 135, 1206-1220.
  • Usadel, B., Nagel, A., Thimm, O., Redestig, H., Blaesing, O.E., Palacios-Rofas, N., Selbig, J., Hannemann, J., Piques, M.C., Steinhauser, D., Scheible, W.R., Gibon, Y., Morcuende, R., Weicht, D., Meyer, S., Stitt, M., 2005. Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiol. 138, 1195-1204.
  • Van Toai, T.T., St. Martin, S.K., Chase, K., Boru, G., Schnipke, V., Schmitthenner, A.F., Lark, K.G., 2001. Identification of a QTL associated with tolerance of soybean to soil waterlogging. Crop Sci. 41, 1247-1252.
  • Voesenek, L.A.C.J., Sasidharan, R., 2013. Ethylene- and oxygen signaling-drive plant survival during flooding. Plant Biol. 15, 426-435.
  • Ziemienowicz, A., Haasen, D., Staiger, D., Merkle, T., 2003. Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein At GRP7. Plant Mol. Biol. 53, 201-212.