Biodiversity Literature Repository

Submit to community
Liberated Data
Published September 30, 2015 | Version v1
Journal article Restricted

Molecular and biochemical characterization of mannitol-1-phosphate dehydrogenase from the model brown alga Ectocarpus sp.

Authors/Creators

Description

Bonin, Patricia, Groisillier, Agnès, Raimbault, Alice, Guibert, Anaïs, Boyen, Catherine, Tonon, Thierry (2015): Molecular and biochemical characterization of mannitol-1-phosphate dehydrogenase from the model brown alga Ectocarpus sp. Phytochemistry 117: 509-520, DOI: 10.1016/j.phytochem.2015.07.015, URL: http://dx.doi.org/10.1016/j.phytochem.2015.07.015

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FFA6FFCE2A03B521FFDEFFB3FFD0FF82

Cites
Publication: 10.1111/1462-2920.12503 (DOI)
Has part
Figure: 10.5281/zenodo.10486560 (DOI)
Figure: 10.5281/zenodo.10486562 (DOI)
Figure: 10.5281/zenodo.10486564 (DOI)
Figure: 10.5281/zenodo.10486566 (DOI)
Figure: 10.5281/zenodo.10486570 (DOI)
Figure: 10.5281/zenodo.10486572 (DOI)

References

  • Ahmed, S., Cock, J.M., Pessia, E., Luthringer, R., Cormier, A., Robuchon, M., Sterck, L., Peters, A.F., Dittami, S.M., Corre, E., Valero, M., Aury, J.M., Roze, D., Van de Peer, Y., Bothwell, J., Marais, G.A.B., Coelho, S.M., 2014. A haploid system of sex determination in the brown alga Ectocarpus sp. Curr. Biol. 24, 1945-1957.
  • Aitken, A., 1996. 14-3-3 and its possible role in co-ordinating multiple signalling pathways. Trends Cell Biol. 6, 341-347.
  • Allocco, J.J., Nare, B., Myers, R.W., Feiglin, M., Schmatz, D.M., Profous-Juchelka, H., 2001. Nitrophenide (Megasul) blocks Eimeria tenella development by inhibiting the mannitol cycle enzyme mannitol-1-phosphate dehydrogenase. J. Parasitol. 87, 1441-1448.
  • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J.H., Zhang, Z., Miller, W., Lipman, D.J., 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
  • Banik, U., Wang, G.A., Wagner, P.D., Kaufman, S., 1997. Interaction of phosphorylated tryptophan hydroxylase with 14-3-3 proteins. J. Biochem. Chem. 226, 26219-26225.
  • Bellamacina, C.R., 1996. Protein motifs. 9. The nicotinamide dinucleotide binding motif: a comparison of nucleotide binding proteins. FASEB J. 10, 1257-1269.
  • Bhatt, S.M., Mohan, A., Srivastava, S.K., 2013. Challenges in enzymatic route of mannitol production. ISRN Biotechnol. 2013, 1-13.
  • Bradford, M.M., 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
  • Chase, T., 1986. Mannitol-1-phosphate dehydrogenase of Escherichia coli. Chemical properties and binding of substrates. Biochem. J. 239, 435-443.
  • Cock, J.M., Sterck, L., Rouze, P., Scornet, D., Allen, A.E., Amoutzias, G., Anthouard, V., Artiguenave, F., Aury, J.M., Badger, J.H., Beszteri, B., Billiau, K., Bonnet, E., Bothwell, J.H., Bowler, C., Boyen, C., Brownlee, C., Carrano, C.J., Charrier, B., Cho, G.Y., Coelho, S.M., Collen, J., Corre, E., Da Silva, C., Delage, L., Delaroque, N., Dittami, S.M., Doulbeau, S., Elias, M., Farnham, G., Gachon, C.M.M., Gschloessl, B., Heesch, S., Jabbari, K., Jubin, C., Kawai, H., Kimura, K., Kloareg, B., Kupper, F.C., Lang, D., Le Bail, A., Leblanc, C., Lerouge, P., Lohr, M., Lopez, P.J., Martens, C., Maumus, F., Michel, G., Miranda-Saavedra, D., Morales, J., Moreau, H., Motomura, T., Nagasato, C., Napoli, C.A., Nelson, D.R., Nyvall-Collen, P., Peters, A.F., Pommier, C., Potin, P., Poulain, J., Quesneville, H., Read, B., Rensing, S.A., Ritter, A., Rousvoal, S., Samanta, M., Samson, G., Schroeder, D.C., Segurens, B., Strittmatter, M., Tonon, T., Tregear, J.W., Valentin, K., von Dassow, P., Yamagishi, T., Van de Peer, Y., Wincker, P., 2010. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 465, 617-621.
  • Cock, J.M., Peters, A.F., Coelho, S.M., 2011. Brown algae. Curr. Biol. 21, 573-575.
  • Deng, Y., Yao, J., Wang, X., Guo, H., Duan, D., 2012. Transcriptome sequencing and comparative analysis of Saccharina japonica (Laminariales, Phaeophyceae) under blue light induction. PLoS One 7, e39704.
  • Dittami, S.M., Aas, H.T., Paulsen, B.S., Boyen, C., Edvardsen, B., Tonon, T., 2011a. Mannitol in six autotrophic stramenopiles and Micromonas. Plant Signal. Behav. 6, 1237-1239.
  • Dittami, S.M., Gravot, A., Renault, D., Goulitquer, S., Eggert, A., Bouchereau, A., Boyen, C., Tonon, T., 2011b. Integrative analysis of metabolite and transcript abundance during the short-term response to saline and oxidative stress in the brown alga Ectocarpus siliculosus. Plant, Cell Environ. 34, 629-642.
  • Dittami, S.M., Proux, C., Rousvoal, S., Peters, A.F., Cock, J.M., Coppee, J.-Y., Boyen, C., Tonon, T., 2011c. Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae). BMC Mol. Biol. 12, 2.
  • Dittami, S.M., Scornet, D., Petit, J.-L., Segurens, B., Da Silva, C., Corre, E., Dondrup, M., Glatting, K.-H., Konig, R., Sterck, L., Rouze, P., Van de Peer, Y., Cock, J.M., Boyen, C., Tonon, T., 2009. Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress. Genome Biol. 10, R66.
  • Eggert, A., Raimund, S., Van Den Daele, K., Karsten, U., 2006. Biochemical characterization of mannitol metabolism in the unicellular red alga Dixoniella grisea (Rhodellophyceae). Eur. J. Phycol. 41, 405-413.
  • Enquist-Newman, M., Faust, A.M.E., Bravo, D.D., Santos, C.N.S., Raisner, R.M., Hanel, A., Sarvabhowman, P., Le, C., Regitsky, D.D., Cooper, S.R., Peereboom, L., Clark, A., Martinez, Y., Goldsmith, J., Cho, M.Y., Donohoue, P.D., Luo, L., Lamberson, B., Tamrakar, P., Kim, E.J., Villari, J.L., Gill, A., Tripathi, S.A., Karamchedu, P., Paredes, C.J., Rajgarhia, V., Kotlar, H.K., Bailey, R.B., Miller, D.J., Ohler, N.L., Swimmer, C., Yoshikuni, Y., 2014. Efficient ethanol production from brown macroalgae sugars by a synthetic yeast platform. Nature 505, 239-243.
  • Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, Appel RD, Bairoch A. 2005. Protein identification and analysis tools on the ExPASy server. (In) John M. Walker (ed): the Proteomics Protocols Handbook, Humana Press 571-607.
  • Gravot, A., Dittami, S.M., Rousvoal, S., Lugan, R., Eggert, A., Collen, J., Boyen, C., Bouchereau, A., Tonon, T., 2010. Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus. New Phytol. 188, 98-110.
  • Groisillier, A., Herve, C., Jeudy, A., Rebuffet, E., Pluchon, P.F., Chevolot, Y., Flament, D., Geslin, C., Morgado, I.M., Power, D., Branno, M., Moreau, H., Michel, G., Boyen, C., Czjzek, M., 2010. MARINE-EXPRESS: taking advantage of high throughput cloning and expression strategies for the post-genomic analysis of marine organisms. Microb. Cell Fact. 9, 45.
  • Groisillier, A., Shao, Z., Michel, G., Goulitquer, S., Bonin, P., Krahulec, S., Nidetzky, B., Duan, D., Boyen, C., Tonon, T., 2014. Mannitol metabolism in brown algae involves a new phosphatase family. J. Exp. Bot. 65, 559-570.
  • Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Sympos. 41, 95-98.
  • Heinrich, S., Frickenhaus, S., Glockner, G., Valentin, K., 2012. A comprehensive cDNA library of light- and temperature-stressed Saccharina latissima (Phaeophyceae). Eur. J. Phycol. 47, 83-94.
  • Ikawa, T., Watanabe, T., Nisizawa, K., 1972. Enzymes involved in the last steps of the biosynthesis of mannitol in brown algae. Plant Cell Physiol. 13, 1017-1029.
  • Iwamoto, K., Kawanobe, H., Ikawa, T., Shiraiwa, Y., 2003. Characterization of salt-regulated mannitol-1-phosphate dehydrogenase in the red alga Caloglossa continua. Plant Physiol. 133, 893-900.
  • Iwamoto, K., Shiraiwa, Y., 2005. Salt-regulated mannitol metabolism in algae. Mar. Biotechnol. (NY) 7, 407-415.
  • Karsten, U., Barrow, K.D., Nixdorf, O., West, J.A., King, R.J., 1997. Characterization of mannitol metabolism in the mangrove red alga Caloglossa leprieurii (Montagne). J. Agardh. Planta 201, 173-178.
  • Kiser, R.C., Niehaus Jr., W.G., 1981. Purification and kinetic characterization of mannitol-1-phosphate dehydrogenase from Aspergillus niger. Arch. Biochem. Biophys. 15, 613-621.
  • Klimacek, M., Kavanagh, K.L., Wilson, D.K., Nidetzky, B., 2003. Pseudomonas fluorescens mannitol 2-dehydrogenase and the family of polyol-specific long-chain dehydrogenases/reductases: sequence-based classification and analysis of structure-function relationships. Chem. Biol. Interact. 143, 559-582.
  • Konotchick, T., Dupont, C.L., Valas, R.E., Badger, J.H., Allen, A.E., 2013. Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season. New Phytol. 198, 398-407.
  • Krahulec, S., Armao, G.C., Weber, H., Klimacek, M., Nidetzky, B., 2008. Characterization of recombinant Aspergillus fumigatus mannitol-1-phosphate 5-dehydrogenase and its application for the stereoselective synthesis of protio and deuterio forms of D- mannitol 1-phosphate. Carbohydr. Res. 343, 1414- 1423.
  • Le Bail, A., Dittami, S.M., de Franco, P.-O., Rousvoal, S., Cock, M.J., Tonon, T., Charrier, B., 2008. Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus. BMC Mol. Biol. 9, 75.
  • McCauley, L.A.R., Wehr, J.D., 2007. Taxonomic reappraisal of the freshwater brown algae Bodanella, Ectocarpus, Heribaudiella, and Pleurocladia (Phaeophyceae) on the basis of rbcL sequences and morphological characters. Phycologia 46, 429- 439.
  • Michel, G., Tonon, T., Scornet, D., Cock, J.M., Kloareg, B., 2010a. The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes. New Phytol. 188, 82-97.
  • Michel, G., Tonon, T., Scornet, D., Cock, J.M., Kloareg, B., 2010b. Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in Eukaryotes. New Phytol. 188, 67-81.
  • Novotny, M.J., Reizer, J., Esch, F., Saier, M.H., 1984. Purification and properties of D- mannitol-1-phosphate dehydrogenase and D- glucitol-6-phosphate dehydrogenase from Escherichia coli. J. Bacteriol. 159, 986-990.
  • Pearson, G.A., Hoarau, G., Lago-Leston, A., Coyer, J.A., Kube, M., Reinhardt, R., Henckel, K., Serrao, E.T.A., Corre, E., Olsen, J.L., 2010. An expressed sequence tag analysis of the intertidal brown seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in response to abiotic stressors. Mar. Biotechnol. 12, 195-213.
  • Pichersky, E., Lewinsohn, E., 2011. Convegent evolution in plant specialized metabolism. Ann. Rev. Plant Biol. 62, 549-566.
  • Prigent, S., Collet, G., Dittami, S.M., Delage, L., de Corny, F.E., Dameron, O., Eveillard, D., Thiele, S., Cambefort, J., Boyen, C., Siegel, A., Tonon, T., 2014. The genomescale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond. Plant J. 80, 367-381.
  • Rambhatla, P., Kumar, S., Floyd, J.T., Varela, M.F., 2011. Molecular cloning and characterization of mannitol-1-phosphate dehydrogenase from Vibrio cholerae. J. Microbiol. Biotechnol. 21, 914-920.
  • Reed, R.H., Davison, I.R., Chudek, J.A., Foster, R., 1985. The osmotic role of mannitol in the Phaeophyta: an appraisal. Phycologia 24, 35-47.
  • Richter, D.F.E., Kirst, G.O., 1987. D- Mannitol dehydrogenase and D- mannitol-1- phosphate dehydrogenase in Platymonas subcordiformis: some characteristics and their role in osmotic adaptation. Planta 170, 528-534.
  • Robert, X., Gouet, P., 2014. Deciphering key features in protein structures with the new ENDscript server. Nucleic Acids Res. 42, 320-324.
  • Roeder, V., Collen, J., Rousvoal, S., Corre, E., Leblanc, C., Boyen, C., 2005. Identification of stress gene transcripts in Laminaria digitata (Phaeophyceae) protoplast cultures by expressed sequence tag analysis. J. Phycol. 41, 1227-1235.
  • Rousvoal, S., Groisillier, A., Dittami, S.M., Michel, G., Boyen, C., Tonon, T., 2011. Mannitol-1-phosphate dehydrogenase activity in Ectocarpus siliculosus, a key role for mannitol synthesis in brown algae. Planta 233, 261-273.
  • Saha, B.C., Racine, F.M., 2011. Biotechnological production of mannitol and its applications. Appl. Microbiol. Biotechnol. 89, 879-891.
  • Sand, M., Mingote, A.I., Santos, H., Muller, V., Averhoff, B., 2013. Mannitol, a compatible solute synthesized by Acinetobacter baylyi in a two-step pathway including a salt-induced and salt-dependent mannitol-1-phosphate dehydrogenase. Environ. Microbiol. 15, 2187-2197.
  • Sand, M., Rodrigues, M., Gonzalez, J.M., de Crecy-Lagard, V., Santos, H., Muller, V., Averhoff, B., 2014. Mannitol-1-phosphate dehydrogenases/phosphatases: a family of novel bifunctional enzymes for bacterial adaptation to osmotic stress. Parasitology. http://dx.doi.org/10.1111/1462-2920.12503.
  • Schmatz, D.M., 1997. The mannitol cycle in Eimeria. Parasitology 114, S81-S89.
  • Schmatz, D.M., Baginsky, W.F., Turner, M.J., 1989. Evidence for and characterization of a mannitol cycle in Eimeria tenella. Mol. Biochem. Parasitol. 32, 263-270.
  • Shao, Z., Zhang, P., Li, Q., Wang, X., Duan, D., 2014. Characterization of mannitol-2- dehydrogenase in Saccharina japonica: evidence for a new polyol-specific long-chain dehydrogenases/reductase. PLoS One 9, e97935.
  • Solomon, P.S., Waters, O.D.C., Oliver, R.P., 2007. Decoding the mannitol enigma in filamentous fungi. Trends Microbiol. 15, 257-262.
  • Stiller, J.W., Schreiber, J., Yue, J., Guo, H., Ding, Q., Huang, J., 2014. The evolution of photosynthesis in chromist algae through serial endosymbioses. Nat. Commun. 5, 5764.
  • Stoop, J.M.H., Williamson, J.D., Pharr, D.M., 1996. Mannitol metabolism in plants: a method for coping with stress. Trends Plant Sci. 1, 139-144.
  • Studier, F.W., 2005. Protein production by auto-induction in high density shaking cultures. Protein Expr. Purif. 41, 207-234.
  • Suvarna, K., Bartiss, A., Wong, B., 2000. Mannitol-1-phosphate dehydrogenase from Cryptococcus neoformans is a zinc-containing long-chain alcohol/polyol dehydrogenase. Microbiology 146, 2705-2713.
  • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., Kumar, S., 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739.
  • Tenhaken, R., Voglas, E., Cock, J.M., Neu, V., Huber, C.G., 2011. Characterization of GDP-mannose dehydrogenase from the brown alga Ectocarpus siliculosus providing the precursor for the alginate polymer. J. Biol. Chem. 286, 16707- 16715.
  • Thompson, J.D., Higgins, D.G., Gibson, T.J., 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
  • Van Hal, J.W., Huijgen, W.J.J., Lopez-Contreras, A.M., 2014. Opportunities and challenges for seaweed in the biobased economy. Trends Biotechnol. 32, 231- 233.
  • Wang, Z.L., Ying, S.H., Feng, M.G., 2010. Gene cloning and catalysis features of a new mannitol-1-phosphate dehydrogenase (BbMPD) from Beauveria bassiana. Carbohydr. Res. 345, 50-54.
  • Wargacki, A.J., Leonard, E., Win, M.N., Regitsky, D.D., Santos, C.N.S., Kim, P.B., Cooper, S.R., Raisner, R.M., Herman, A., Sivitz, A.B., Lakshmanaswamy, A., Kashiyama, Y., Baker, D., Yoshikuni, Y., 2012. An engineered microbial platform for direct biofuel production from brown macroalgae. Science 335, 308-313.
  • Wei, N., Quarterman, J., Jin, Y.-S., 2013. Marine macroalgae: an untapped resource for producing fuels and chemicals. Trends Biotechnol. 31, 70-77.
  • Wisselink, H.W., Weusthuis, R.A., Eggink, G., Hugenholtz, J., Grobben, G.J., 2002. Mannitol production by lactic acid bacteria: a review. Int. Dairy J. 12, 151-161.
  • Wong, T.K.-M., Ho, C.-L., Lee, W.-W., Rahim, R.A., Phang, S.-M., 2007. Analyses of expressed sequence tags from Sargassum binderi (phaeophyta). J. Phycol. 43, 528-534.