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Published August 16, 2018 | Version v1
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Chemical and genomic diversity of six Lonicera species occurring in Korea

Authors/Creators

  • 1. College of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul, 08826, Republic of Korea & Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea
  • 2. Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea
  • 3. College of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul, 08826, Republic of Korea
  • 4. Medicinal Plant Garden, College of Pharmacy, Seoul National University, Koyang, 12045, Republic of Korea & College of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul, 08826, Republic of Korea & Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea

Description

Kang, Kyo Bin, Kang, Shin-Jae, Kim, Mi Song, Lee, Dong Young, Han, Sang Il, Kim, Tae Bum, Park, Jee Young, Kim, Jinwoong, Yang, Tae-Jin, Sung, Sang Hyun (2018): Chemical and genomic diversity of six Lonicera species occurring in Korea. Phytochemistry 155: 126-135, DOI: 10.1016/j.phytochem.2018.07.012, URL: http://dx.doi.org/10.1016/j.phytochem.2018.07.012

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Identifiers

URL
https://www.checklistbank.org/dataset/285218
LSID
urn:lsid:plazi.org:pub:D721FFB4FFAB1F06FFFD8403FFEDFF96
URL
http://publication.plazi.org/id/D721FFB4FFAB1F06FFFD8403FFEDFF96

Has part
Taxonomic treatment: 10.5281/zenodo.10514461 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/2B1887CCFFAA1F03FF99814CFBFEFDF0 (URL)
Dataset: 10.5281/zenodo.15155108 (DOI)
Dataset: 10.5281/zenodo.15155110 (DOI)
Figure: 10.5281/zenodo.10484357 (DOI)
Figure: 10.5281/zenodo.10484359 (DOI)
Figure: 10.5281/zenodo.10484361 (DOI)
Dataset: 10.5281/zenodo.15155112 (DOI)
Figure: 10.5281/zenodo.10484363 (DOI)
Figure: 10.5281/zenodo.10484365 (DOI)
Figure: 10.5281/zenodo.10484367 (DOI)
Figure: 10.5281/zenodo.10484369 (DOI)
Is source of
Dataset: https://www.gbif.org/dataset/7f7aa78f-bf61-4e55-af34-c1c79021655a (URL)

References

  • Aimi, N., Seki, H., Sakai, S., Haginiwa, J., 1993. Kinginoside, a new acyl group carrying iridoid bioside from Lonicera morrowii. Chem. Pharm. Bull. 41, 1882-1884.
  • Allen, G.C., Flores-Vergara, M.A., Krasnyanski, S., Kumar, S., Thompson, W.F., 2006. A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nat. Protoc. 1, 2320-2325.
  • Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
  • Calis, I., Lahloub, M.F., Sticher, O., 1984. Loganin, loganic acid and periclymenoside, a new biosidic ester iridoid glucoside from Lonicera periclymenum L. (Caprifoliaceae). Helv. Chim. Acta 67, 160-165.
  • Chen, J., Xu, Y., Wei, G., Liao, S., Zhang, Y., Huang, W., Yuan, L., Wang, Y., 2015. Chemotypic and genetic diversity in Epimedium sagittatum from different geographical regions of China. Phytochemistry 116, 180-187.
  • Chen, J., Xia, N., Wang, X., Beeson Jr., R.C., Chen, J., 2017. Ploidy level, karyotype, and DNA content in the genus Lonicera. Hortscience 52, 1680-1686.
  • Choi, C.W., Jung, H.A., Kang, S.S., Choi, J.S., 2007. Antioxidant constituents and a new triterpenoid glycoside from Flos Lonicerae. Arch Pharm. Res. 30, 1-7.
  • Cipollini, D., Stevenson, R., Cipollini, K., 2008a. Contrasting direct and indirect effects of allelochemicals from two invasive plants on the performance of a non-mycorrhizal plant. Int. J. Plant Sci. 169, 371-375.
  • Cipollini, D., Dorning, M., 2008. Direct and indirect effects of conditioned soils and tissue extracts of the invasive shrub, Lonicera maackii, on target plant performance. Castanea 73, 166-176.
  • Cipollini, D., Stevenson, R., Enright, S., Eyles, A., Bonello, P., 2008b. Phenolic metabolites in leaves of the invasive shrub, Lonicera maackii, and their potential phytotoxic and anti-herbivore effects. J. Chem. Ecol. 34, 144-152.
  • de Bernonville, T.D., Foureau, E., Parage, C., Lanoue, A., Clastre, M., Londono, M.A., Oudin, A., Houille, B., Papon, N., Besseau, S., Glevarec, G., Atehortua, L., Giglioli- Guivarc'h, N., St-Pierre, B., De Luca, V., O'Connor, S.E., Courdavault, V., 2015. Characterization of a second secologanin synthase isoform producing both secologanin and secoxyloganin allows enhanced de novo assembly of a Catharanthus roseus transcriptome. BMC Genom. 16, 619.
  • Ding, Y., Cao, Z., Cao, L., Ding, G., Wang, Z., Xiao, W., 2017. Antiviral activity of chlorogenic acid against influenza A (H1N1/H3N2) virus and its inhibition of neuraminidase. Sci. Rep. 7, 45723.
  • Dobler, S., Petschenka, G., Pankoke, H., 2011. Coping with toxic plant compounds - the insect's perspective on iridoid glycosides and cardenolides. Phytochemistry 72, 1593-1604.
  • Es-Safi, N.E., Kerhoas, L., Ducrot, P.H., 2007. Fragmentation study of iridoid glucosides through positive and negative electrospray ionization, collision-induced dissociation and tandem mass spectrometry. Rapid Commun. Mass Spectrom. 21, 1165-1175.
  • Fabre, N., Rustan, I., de Hoffmann, E., Quetin-Leclercq, J., 2001. Determination of flavone, flavonol, and flavanone aglycones by negative ion liquid chromatography electrospray ion trap mass spectrometry. J. Am. Soc. Mass Spectrom. 12, 707-715.
  • Gao, Z.T., Liu, Y., Wang, X.Y., Song, J.Y., Chen, S.L., Ragupathy, S., Han, J.P., Newmaster, S.G., 2017. Derivative technology of DNA barcoding (nucleotide signature and SNP double peak methods) detects adulterants and substitution in Chinese patent medicines. Sci. Rep. 7, 5858.
  • Hamilton, J.G., Zangerl, A.R., DeLucia, E.H., Berenbaum, M.R., 2001. The carbon-nutrient balance hypothesis: its rise and fall. Ecol. Lett. 4, 86-95.
  • Hara, H., 1983. A Revision of Caprifoliaceae of Japan with Reference to Allied Plants in Other Districts and the Adoxaceae. Academia Scientific Book, Tokyo.
  • Hsu, P., Wang, H., 1988. Lonicera. In: Hsu, P., H. W., Hu, J. (Eds.), Flora Republicae Popularis Sinicae. Science Press, Beijing, pp. 153-257.
  • Irmler, S., Schroder, G., St-Pierre, B., Crouch, N.P., Hotze, M., Schmidt, J., Strack, D., Matern, U., Schroder, J., 2000. Indole alkaloid biosynthesis in Catharanthus roseus: new enzyme activities and identification of cytochrome P450CYP72A1 as secologanin synthase. Plant J. 24, 797-804.
  • Jaiswal, R., Muller, H., Muller, A., Karar, M.G., Kuhnert, N., 2014. Identification and characterization of chlorogenic acids, chlorogenic acid glycosides and flavonoids from Lonicera henryi L. (Caprifoliaceae) leaves by LC-MS n. Phytochemistry 108, 252-263.
  • Kang, K.B., Lee, D.Y., Kim, M.S., Kim, T.B., Yang, T.J., Sung, S.H., 2018. Argininosecologanin, a secoiridoid-derived guanidine alkaloid from the roots of Lonicera insularis. Nat. Prod. Res. 32, 788-794.
  • Kim, K., Lee, S.C., Lee, J., Yu, Y., Yang, K., Choi, B.S., Koh, H.J., Waminal, N.E., Choi, H.I., Kim, N.H., Jang, W., Park, H.S., Lee, J., Lee, H.O., Joh, H.J., Lee, H.J., Park, J.Y., Perumal, S., Jayakodi, M., Lee, Y.S., Kim, B., Copetti, D., Kim, S., Kim, S., Lim, K.B., Kim, Y.D., Lee, J., Cho, K.S., Park, B.S., Wing, R.A., Yang, T.J., 2015. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Sci. Rep. 5, 15655.
  • Kim, K., Nguyen, V.B., Dong, J.Z., Wang, Y., Park, J.Y., Lee, S.C., Yang, T.J., 2017. Evolution of the Araliaceae family inferred from complete chloroplast genomes and 45S nrDNAs of 10 Panax -related species. Sci. Rep. 7, 4917.
  • Kucharska, A.Z., Fecka, I., 2016. Identification of iridoids in edible honeysuckle berries (Lonicera caerulea L. var. kamtschatica Sevast.) by UPLC-ESI-qTOF-MS/MS. Molecules 21, 1157.
  • Kucharska, A.Z., Sokol-Letowska, A., Oszmianski, J., Piorecki, N., Fecka, I., 2017. Iridoids, phenolic compounds and antioxidant activity of edible honeysuckle berries (Lonicera caerulea var. kamtschatica Sevast.). Molecules 22, 405.
  • Lee, S.J., Shin, E.J., Son, K.H., Chang, H.W., Kang, S.S., Kim, H.P., 1995. Antiinflammatory activity of the major constituents of Lonicera japonica. Arch Pharm. Res. 18, 133-135.
  • Liu, Y., Wang, Y., Guo, F.X., Zhan, L., Mohr, T., Cheng, P., Huo, N.X., Gu, R.H., Pei, D.N., Sun, J.Q., Tang, L., Long, C.L., Huang, L.Q., Gu, Y.Q., 2017. Deep sequencing and transcriptome analyses to identify genes involved in secoiridoid biosynthesis in the Tibetan medicinal plant Swertia mussotii. Sci. Rep. 7, 43108.
  • March, R.E., Lewars, E.G., Stadey, C.J., Miao, X.S., Zhao, X.M., Metcalfe, C.D., 2006. A comparison of flavonoid glycosides by electrospray tandem mass spectrometry. Int. J. Mass Spectrom. 248, 61-85.
  • Naugzemys, D., Zilinskaite, S., Skridaila, A., Zvingila, D., 2014. Phylogenetic analysis of the polymorphic 4× species complex Lonicera caerulea (Caprifoliaceae) using RAPD markers and noncoding chloroplast DNA sequences. Biologia 69, 585-593.
  • Penuelas, J., Sardans, J., Stefanescu, C., Parella, T., Filella, I., 2006. Lonicera implexa leaves bearing naturally laid eggs of the specialist herbivore Euphydryas aurinia have dramatically greater concentrations of iridoid glycosides than other leaves. J. Chem. Ecol. 32, 1925-1933.
  • Plumb, R.S., Johnson, K.A., Rainville, P., Smith, B.W., Wilson, I.D., Castro-Perez, J.M., Nicholson, J.K., 2006. UPLC/MS E; a new approach for generating molecular fragment information for biomarker structure elucidation. Rapid Commun. Mass Spectrom. 20, 1989-1994.
  • Qi, L.W., Chen, C.Y., Li, P., 2009. Structural characterization and identification of iridoid glycosides, saponins, phenolic acids and flavonoids in Flos Lonicerae Japonicae by a fast liquid chromatography method with diode-array detection and time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom. 23, 3227-3242.
  • Rai, A., Kamochi, H., Suzuki, H., Nakamura, M., Takahashi, H., Hatada, T., Saito, K., Yamazaki, M., 2017. De novo transcriptome assembly and characterization of nine tissues of Lonicera japonica to identify potential candidate genes involved in chlorogenic acid, luteolosides, and secoiridoid biosynthesis pathways. J. Nat. Med. 71, 1-15.
  • Rehder, A., 1903. Synopsis of the Genus Lonicera. Missouri Botanical Garden Annual Report, vol. 14 27-232.
  • Ren, M.T., Chen, J., Song, Y., Sheng, L.S., Li, P., Qi, L.W., 2008. Identification and quantification of 32 bioactive compounds in Lonicera species by high performance liquid chromatography coupled with time-of-flight mass spectrometry. J. Pharm. Biomed. Anal. 48, 1351-1360.
  • Schierenbeck, K.A., 2004. Japanese honeysuckle (Lonicera japonica) as an invasive species; History, ecology, and context. Crit. Rev. Plant Sci. 23, 391-400.
  • Shang, X., Pan, H., Li, M., Miao, X., Ding, H., 2011. Lonicera japonica Thunb.: ethnopharmacology, phytochemistry and pharmacology of an important traditional Chinese medicine. J. Ethnopharmacol. 138, 1-21.
  • Smith, S.A., 2009. Taking into account phylogenetic and divergence-time uncertainty in a parametric biogeographical analysis of the Northern Hemisphere plant clade Caprifolieae. J. Biogeogr. 36, 2324-2337.
  • Smith, S.A., Donoghue, M.J., 2010. Combining historical biogeography with niche modeling in the Caprifolium clade of Lonicera (Caprifoliaceae, Dipsacales). Syst. Biol. 59, 322-341.
  • Sun, C., Teng, Y., Li, G., Yoshioka, S., Yokota, J., Miyamura, M., Fang, H., Zhang, Y., 2010. Metabonomics study of the protective effects of Lonicera japonica extract on acute liver injury in dimethylnitrosamine treated rats. J. Pharm. Biomed. Anal. 53, 98-102.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S., 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725-2729.
  • Theis, N., Donoghue, M.J., Li, J.H., 2008. Phylogenetics of the Caprifolieae and Lonicera (Dipsacales) based on nuclear and chloroplast DNA sequences. Syst. Bot. 33, 776-783.
  • Wang, L., Jiang, Q., Hu, J., Zhang, Y., Li, J., 2016. Research progress on chemical constituents of Lonicerae japonicae flos. BioMed Res. Int. 2016, 8968940.
  • Watling, J.I., Hickman, C.R., Lee, E., Wang, K., Orrock, J.L., 2011. Extracts of the invasive shrub Lonicera maackii increase mortality and alter behavior of amphibian larvae. Oecologia 165, 153-159.
  • Whitehead, S.R., Bowers, M.D., 2013. Iridoid and secoiridoid glycosides in a hybrid complex of bush honeysuckles (Lonicera spp., Caprifolicaceae): implications for evolutionary ecology and invasion biology. Phytochemistry 86, 57-63.
  • Wolfender, J.L., Marti, G., Thomas, A., Bertrand, S., 2015. Current approaches and challenges for the metabolite profiling of complex natural extracts. J. Chromatogr. A 1382, 136-164.
  • Yamamoto, H., Katano, N., Ooi, A., Inoue, K., 2000. Secologanin synthase which catalyzes the oxidative cleavage of loganin into secologanin is a cytochrome P450. Phytochemistry 53, 7-12.
  • Yamamoto, H., Katano, N., Ooi, Y., Inoue, K., 2000. Transformation of loganin and 7- deoxyloganin into secologanin by Lonicera japonica cell suspension cultures. Phytochemistry 50, 417-422.
  • Zhang, Y.D., Huang, X., Zhao, F.L., Tang, Y.L., Yin, L., 2015. Study on the chemical markers of Caulis Lonicerae japonicae for quality control by HPLC-QTOF/MS/MS and chromatographic fingerprints combined with chemometrics methods. Anal. Meth. 7, 2064-2076.