GeneFinder.jl: an extensible Julia package hosting implementations of Gene Finding algorithms

GeneFinder v0.2.0

Diff since v0.1.0

Breaking changes

• A more stable ORF type that asserts for incorrect ORFs.
• Extended Base.getindex method to better handle ORF enabling: seq[orf] regardless of the ORF strand.
• The write_* API is much more stable and its been rewriten to handle IOStreams and IOBuffers as well.
• The new record_orfs_fna and record_orfs_faa methods intearact with the FASTX interface.
• Codebase has been reduced. Direct String manipulation is not enabled for findorfs and get_* methods.
• Docstrings have been updated following method updates.
• Better tests and now Aqua.jl is used for several tests as well.

Merged pull requests:

• Refactor ORF main type, update entire writting API and other general changes (#23) (@camilogarciabotero)