Cool Seq Tool

What's Changed

• feat!: use latest UTA schema as default by @jsstevenson in https://github.com/GenomicMedLab/cool-seq-tool/pull/223
• feat!: include cdna and protein represenation when starting from genomic layer by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/228
• docs: add documentation by @jsstevenson in https://github.com/GenomicMedLab/cool-seq-tool/pull/222
• docs: add documentation links by @jsstevenson in https://github.com/GenomicMedLab/cool-seq-tool/pull/233
• build: remove pipenv support by @jsstevenson in https://github.com/GenomicMedLab/cool-seq-tool/pull/236
• build: use pyproject.toml for build config by @jsstevenson in https://github.com/GenomicMedLab/cool-seq-tool/pull/234
• test: make doctests work by @jsstevenson in https://github.com/GenomicMedLab/cool-seq-tool/pull/240
• fix!: return inter-residue positions instead of zero-based positions by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/235
• chore: rm pipfile lock references in .gitignore by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/238
• fix: polars InvalidOperationError by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/241
• style: use ruff for formatting by @jsstevenson in https://github.com/GenomicMedLab/cool-seq-tool/pull/242
• refactor: use enum for strand by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/244
• tests: resolve warnings by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/247
• refactor!: fix class naming by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/249
• refactor!: initial work for cleaning up ExonGenomicCoordsMapper by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/252
• chore: remove todo's in tests by @korikuzma in https://github.com/GenomicMedLab/cool-seq-tool/pull/251

Full Changelog: https://github.com/GenomicMedLab/cool-seq-tool/compare/0.3.0-dev1...0.4.0-dev0