Published January 10, 2024
| Version 23.2.0
Software
Open
fMRIPrep: a robust preprocessing pipeline for functional MRI
Authors/Creators
- 1. Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
- 2. Department of Psychology, Stanford University
- 3. Department of Psychology, Florida International University
- 4. Neuroscience Program, University of Iowa
- 5. Montreal Neurological Institute, McGill University
- 6. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
Contributors
Researcher (49):
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Provins, Céline1
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Madison, Thomas2
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Smith, Robert E.3
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Papadopoulos, Dimitri4
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Finc, Karolina5
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Feingold, Franklin6
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Tooley, Ursula A.7
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Bhagwat, Nikhil8
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Halchenko, Yaroslav O.9
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Benson, Noah C.10
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de la Vega, Alejandro11
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Schaefer, Theo A.J.12
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Urchs, Sebastian8
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Nielson, Dylan M.13
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Heinsfeld, Anibal S.14
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Waller, Lea15
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Mentch, Jeff16
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Lurie, Daniel J.17
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Erramuzpe, Asier18
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Jamison, Keith W.19
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Wexler, Joseph B.6
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Plunkett, Dillon20
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Nitsch, Alexander12
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Ma, Feilong9
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Adebimpe, Azeez21
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Amlien, Inge K.22
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Bellec, Pierre23
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Cieslak, Matthew21
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Devenyi, Grabriel A.24
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Frederick, Blaise B.25
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Gomez, Daniel E. P.26
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Groen, Iris I. A.27
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Isik, Ayse Ilkay28
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Jacoby, Nir29
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Kruper, John30
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Liem, Franz31
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Moodie, Craig A.6
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Naveau, Mikaël32
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Rivera-Dompenciel, Adriana33
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Satterthwaite, Theodore D.21
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Sitek, Kevin R.16
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Sneve, Markus H.22
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Stojić, Hrvoje34
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Thompson, William H.6
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Valabregue, Romain35
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Velasco, Pablo36
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Wright, Jessey6
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Ye, Zhifang37
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Ghosh, Satrajit S.38
- 1. Department of Radiology, Lausanne University Hospital and University of Lausanne
- 2. Department of Pediatrics, University of Minnesota, MN, USA
- 3. Florey Institute of Neuroscience and Mental Health
- 4. Neurospin, CEA
- 5. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
- 6. Department of Psychology, Stanford University
- 7. Department of Neuroscience, University of Pennsylvania, PA, USA
- 8. Montreal Neurological Institute, McGill University
- 9. Dartmouth College: Hanover, NH, United States
- 10. Department of Psychology, New York University
- 11. University of Texas at Austin
- 12. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 13. Machine Learning Team, National Institute of Mental Health, USA
- 14. Child Mind Institute
- 15. Charite Universitatsmedizin Berlin, Germany
- 16. Speech & Hearing Bioscience & Technology Program, Harvard University
- 17. Department of Psychology, University of California, Berkeley
- 18. Computational Neuroimaging Lab, BioCruces Health Research Institute
- 19. Department of Radiology, Weill Cornell Medicine
- 20. Department of Psychology, Harvard University
- 21. Perelman School of Medicine, University of Pennsylvania, PA, USA
- 22. Center for Lifespan Changes in Brain and Cognition, University of Oslo
- 23. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
- 24. Department of Psychiatry, McGill University
- 25. McLean Hospital Brain Imaging Center, MA, USA
- 26. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
- 27. Department of Psychology, New York University, NY, USA
- 28. Max Planck Institute for Empirical Aesthetics
- 29. Department of Psychology, Columbia University
- 30. Department of Psychology, University of Washington
- 31. URPP Dynamics of Healthy Aging, University of Zurich
- 32. Cyceron, UMS 3408 (CNRS - UCBN), France
- 33. Neuroscience Program, University of Iowa
- 34. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
- 35. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
- 36. Center for Brain Imaging, New York University
- 37. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University
- 38. McGovern Institute for Brain Research, MIT, MA, USA
Description
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Files
nipreps/fmriprep-23.2.0.zip
Files
(24.0 MB)
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Additional details
Related works
- Documents
- https://fmriprep.org (URL)
- Is part of
- 10.1038/s41592-018-0235-4 (DOI)