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Published January 8, 2024 | Version 3.14.0
Software Open

nf-core/rnaseq: nf-core/rnaseq v3.14.0 - Hassium Honey Badger

Creators

  • 1. Seqera Labs
  • 2. @seqeralabs
  • 3. Boehringer Ingelheim
  • 4. DeepLife
  • 5. @BridgeBioAnalytics
  • 6. @seqeralabs | Stockholm
  • 7. Inivata
  • 8. @NBISweden
  • 9. @qbicsoftware
  • 10. @SciLifeLab
  • 11. Francis Crick Institute @crickbabs
  • 12. QBiC
  • 13. HKI Jena, MPI-EVA Leipzig
  • 14. CRG
  • 15. The Francis Crick Institute
  • 16. @Functional-Genomics-Lab
  • 17. @maizeumn
  • 18. bilille
  • 19. TU Munich

Description

What's Changed

  • Bump versions for work on 3.14.0 milestone by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1129
  • Update action tower launch to v2 by @adamrtalbot in https://github.com/nf-core/rnaseq/pull/1135
  • Update FastQC and UMItools modules by @mahesh-panchal in https://github.com/nf-core/rnaseq/pull/1138
  • MultiQC dupRadar custom plot: specify plot_type explicitly by @vladsavelyev in https://github.com/nf-core/rnaseq/pull/1137
  • Important! Template update for nf-core/tools v2.11 by @nf-core-bot in https://github.com/nf-core/rnaseq/pull/1141
  • Revert "Update FastQC and UMItools modules" by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1148
  • Patch modules to fix #1103 by @drpatelh in https://github.com/nf-core/rnaseq/pull/1149
  • Interface to kmer size for pseudoaligners by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1144
  • Move fasta check back to Groovy by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1143
  • Be more flexible on attribute values in GTFs by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1150
  • fix to #1150: reinstate conditional by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1151
  • Bump container versions for tools using Docker V1 manifest by @drpatelh in https://github.com/nf-core/rnaseq/pull/1152
  • Prerelease 3.14.0 fixes by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1154
  • Add slash to outdir for cloud tests to fix Azure validation… by @drpatelh in https://github.com/nf-core/rnaseq/pull/1157
  • Bump MultiQC version from 1.17 -> 1.19 by @drpatelh in https://github.com/nf-core/rnaseq/pull/1159
  • Final prerelease fixes to fix Cloud CI by @drpatelh in https://github.com/nf-core/rnaseq/pull/1160
  • Dev -> master for 3.14.0 release by @drpatelh in https://github.com/nf-core/rnaseq/pull/1156

New Contributors

  • @vladsavelyev made their first contribution in https://github.com/nf-core/rnaseq/pull/1137

Full Changelog: https://github.com/nf-core/rnaseq/compare/3.13.2...3.14.0

Files

nf-core/rnaseq-3.14.0.zip

Files (6.1 MB)

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md5:1d1598c40287a43451641be532cd9576
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/rnaseq/tree/3.14.0 (URL)