Research Institute for Nature and Forest (INBO)
Published December 22, 2023 | Version 20230906
Dataset Open

12S metabarcoding reference data from the Research Institute for Nature and Forest (INBO)

Authors/Creators

  • 1. ROR icon Research Institute for Nature and Forest
  • 2. ROR icon Instituut voor Landbouw en Visserijonderzoek

Description

This dataset contains metabarcoding reference data with 12S sequences from fish and other vertebrates for Teleo and Riaz primers suited for use with the OBITools package.

Files
- all_seqs_INBO_riaz_amplified.fasta: reference data for Riaz marker
- all_seqs_INBO_Valentini_teleo_amplified.fasta: reference data for Teleo marker
- species_INBO_riaz.csv: species for which reference data is included in Riaz dataset
- species_INBO_teleo.csv: species for which reference data is included in Teleo dataset

Files

species_INBO_riaz.csv

Files (12.2 MB)

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md5:54e0962f23e7a55111adc9a03326387e
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Additional details

References

  • Boyer, F, Mercier, C, Bonin, A, Le Bras, Y, Taberlet, P, & Coissac, E. (2016). Obitools: A Unix-Inspired Software Package for DNA Metabarcoding. Molecular Ecology Resources, 16(1), 176-82. doi: 10.1111/1755-0998.12428
  • Valentini, A., Taberlet, P., Miaud, C., Civade, R., Herder, J., Thomsen, P.F., … & Gaboriaud C. (2016). Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding. Molecular Ecology 25(4), 929-942. doi: org/10.1111/mec.13428
  • Riaz, T., Shehzad, W., Viari, A., Pompanon, F., Taberlet, P., & Coissac, E. (2011). ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis. Nucleic acids research, 39(21), e145. doi: 10.1093/nar/gkr732