Published February 19, 2026
| Version v2
Dataset
Open
akiomiyao/tef: TE list in Arabidopsis thaliana herbarium specimen detected by TEFv1.6
Description
Transposable elements (TEs) in Arabidopsis thaliana herbarium specimens were reanalyzed using TEF v1.6. Transposition events were identified by comparing each accession to SRR13608004 (Col-0). TE head-tail pairs detected at two or more positions on the TAIR10 reference genome are listed. TE names from the TAIR10_TE.fas.txt file are shown in the table. TEs without names represent novel detections in this analysis.
This dataset serves as an archive of the data originally published on the following website: https://akiomiyao.github.io/tef/arabidopsis.html.
Files
tef-v1.6-page1.zip
Files
(43.9 kB)
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Additional details
Related works
- Is supplement to
- Dataset: https://github.com/akiomiyao/tef/tree/v1.4.page1 (URL)