Published December 15, 2023
| Version v4.1.0
Software
Open
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
Authors/Creators
- Unni, Deepak R.
- Moxon, Sierra A. T.
- Bada, Michael
- Brush, Matthew
- Bruskiewich, Richard
- Caufield, J. Harry
- Clemons, Paul A.
- Dancik, Vlado
- Dumontier, Michel
- Fecho, Karamarie
- Glusman, Gustavo
- Hadlock, Jennifer J.
- Harris, Nomi L.
- Joshi, Arpita
- Putman, Tim
- Qin, Guangrong
- Ramsey, Stephen A.
- Shefchek, Kent A.
- Solbrig, Harold
- Soman, Karthik
- Thessen, Anne E.
- Haendel, Melissa A.
- Bizon, Chris
- Mungall, Christopher J.
- Acevedo, Liliana
- Ahalt, Stanley C.
- Alden, John
- Alkanaq, Ahmed
- Amin, Nada
- Avila, Ricardo
- Balhoff, Jim
- Baranzini, Sergio E.
- Baumgartner, Andrew
- Baumgartner, William
- Belhu, Basazin
- Brandes, MacKenzie
- Brandon, Namdi
- Burtt, Noel
- Byrd, William
- Callaghan, Jackson
- Cano, Marco Alvarado
- Carrell, Steven
- Celebi, Remzi
- Champion, James
- Chen, Zhehuan
- Chen, Mei‐Jan
- Chung, Lawrence
- Cohen, Kevin
- Conlin, Tom
- Corkill, Dan
- Costanzo, Maria
- Cox, Steven
- Crouse, Andrew
- Crowder, Camerron
- Crumbley, Mary E.
- Dai, Cheng
- Dančík, Vlado
- De Miranda Azevedo, Ricardo
- Deutsch, Eric
- Dougherty, Jennifer
- Duby, Marc P.
- Duvvuri, Venkata
- Edwards, Stephen
- Emonet, Vincent
- Fehrmann, Nathaniel
- Flannick, Jason
- Foksinska, Aleksandra M.
- Gardner, Vicki
- Gatica, Edgar
- Glen, Amy
- Goel, Prateek
- Gormley, Joseph
- Greyber, Alon
- Haaland, Perry
- Hanspers, Kristina
- He, Kaiwen
- He, Kaiwen
- Henrickson, Jeff
- Hinderer, Eugene W.
- Hoatlin, Maureen
- Hoffman, Andrew
- Huang, Sui
- Huang, Conrad
- Hubal, Robert
- Huellas‐Bruskiewicz, Kenneth
- Huls, Forest B.
- Hunter, Lawrence
- Hyde, Greg
- Issabekova, Tursynay
- Jarrell, Matthew
- Jenkins, Lindsay
- Johs, Adam
- Kang, Jimin
- Kanwar, Richa
- Kebede, Yaphet
- Kim, Keum Joo
- Kluge, Alexandria
- Knowles, Michael
- Koesterer, Ryan
- Korn, Daniel
- Koslicki, David
- Krishnamurthy, Ashok
- Kvarfordt, Lindsey
- Lee, Jay
- Leigh, Margaret
- Lin, Jason
- Liu, Zheng
- Liu, Shaopeng
- Ma, Chunyu
- Magis, Andrew
- Mamidi, Tarun
- Mandal, Meisha
- Mantilla, Michelle
- Massung, Jeffrey
- Mauldin, Denise
- McClelland, Jason
- McMurry, Julie
- Mease, Philip
- Mendoza, Luis
- Mersmann, Marian
- Mesbah, Abrar
- Might, Matthew
- Morton, Kenny
- Muller, Sandrine
- Muluka, Arun Teja
- Osborne, John
- Owen, Phil
- Patton, Michael
- Peden, David B.
- Peene, R. Carter
- Persaud, Bria
- Pfaff, Emily
- Pico, Alexander
- Pollard, Elizabeth
- Price, Guthrie
- Raj, Shruti
- Reilly, Jason
- Riutta, Anders
- Roach, Jared
- Roper, Ryan T.
- Rosenblatt, Greg
- Rubin, Irit
- Rucka, Sienna
- Rudavsky‐Brody, Nathaniel
- Sakaguchi, Rayn
- Santos, Eugene
- Schaper, Kevin
- Schmitt, Charles P.
- Schurman, Shepherd
- Scott, Erik
- Seitanakis, Sarah
- Sharma, Priya
- Shmulevich, Ilya
- Shrestha, Manil
- Shrivastava, Shalki
- Sinha, Meghamala
- Smith, Brett
- Southall, Noel
- Southern, Nicholas
- Stillwell, Lisa
- Strasser, Michael " Michi"
- Su, Andrew I.
- Ta, Casey
- Thessen, Anne E.
- Tinglin, Jillian
- Tonstad, Lucas
- Tran‐Nguyen, Thi
- Tropsha, Alexander
- Vaidya, Gaurav
- Veenhuis, Luke
- Viola, Adam
- Grotthuss, Marcin
- Wang, Max
- Wang, Patrick
- Watkins, Paul B.
- Weber, Rosina
- Wei, Qi
- Weng, Chunhua
- Whitlock, Jordan
- Williams, Mark D.
- Williams, Andrew
- Womack, Finn
- Wood, Erica
- Wu, Chunlei
- Xin, Jiwen Kevin
- Xu, Hao
- Xu, Colleen
- Yakaboski, Chase
- Yao, Yao
- Yi, Hong
- Yilmaz, Arif
- Zheng, Marissa
- Zhou, Xinghua
- Zhou, Eric
- Zhu, Qian
- Zisk, Tom
Description
What's Changed
- ubergraph and sri-reference-kg/monarchinitiative updates by @EvanDietzMorris in https://github.com/biolink/biolink-model/pull/1428
- Add infores validation checks to PRs and makefile target by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1434
- add canonical flag to superclass of by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1433
- make subclass of an inverse of superclass of by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1435
- make changes according to https://docs.google.com/spreadsheets/d/12SP… by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1436
- Adds infores:aop-cam (Adverse Outcome Pathways Casual Activity Models) by @gaurav in https://github.com/biolink/biolink-model/pull/1437
- Treats viz test by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1439
- "max predicate approach" for refactoring "treats" by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1328
- Dec 2023 infores updates for Service Provider/BTE by @colleenXu in https://github.com/biolink/biolink-model/pull/1429
- add context at beginning, fix some awkward wording by @nlharris in https://github.com/biolink/biolink-model/pull/1438
- ready for release 4.1.0 by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1440
Full Changelog: https://github.com/biolink/biolink-model/compare/v4.0.0...v4.1.0
Notes
Please cite the following works when using this software.
Files
biolink/biolink-model-v4.1.0.zip
Files
(3.5 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:5ddad0260b3cbb1105849bd0bfd60052
|
3.5 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/biolink/biolink-model/tree/v4.1.0 (URL)