Published January 5, 2024
| Version 1.0
Dataset
Open
PHROGs v4 BATH Format
Description
Derivative copy of the PHROGs v4 prokaryotic virus gene database reformatted to work with BATH. Used by the VIBES prophage annotation workflow as a default viral gene annotation database. Released under CC license based on communication with PHROGs authors (to whom attribution should refer: https://phrogs.lmge.uca.fr/)
Files
Files
(3.3 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:dbe941fd69ff22ab572f49c4060c3dda
|
3.3 GB | Download |
Additional details
Related works
- Is required by
- Software: https://github.com/TravisWheelerLab/VIBES (URL)
- Is variant form of
- Dataset: 10.1093/nargab/lqab067 (DOI)
References
- Terzian, Paul, Eric Olo Ndela, Clovis Galiez, Julien Lossouarn, Rubén Enrique Pérez Bucio, Robin Mom, Ariane Toussaint, Marie-Agnès Petit, and François Enault. 2021. "PHROG: Families of Prokaryotic Virus Proteins Clustered Using Remote Homology." NAR Genomics and Bioinformatics 3 (3): lqab067.
- Copeland, Conner J., Jack W. Roddy, Amelia K. Schmidt, Patrick R. Secor, and Travis J. Wheeler. 2023. "VIBES: A Workflow for Annotating and Visualizing Viral Sequences Integrated into Bacterial Genomes." bioRxiv. https://doi.org/10.1101/2023.10.17.562434.