AlphaPept Benchmark Dataset

This is accompanying data for the benchmark of the AlphaPept software https://www.biorxiv.org/content/10.1101/2021.07.23.453379v1

Files starting with PXD028735: These are the output files and logs from Figure 7: Benchmarking AlphaPept on Thermo and Bruker mixed species datasets. Raw data was taken from PXD028735.

SLURM: Code and logs for running on SLURM cluster for the 200 HeLa proteome test, see Supplementary Table 1

AWS_test: Timings when running on large AWS instances, see Supplementary Table 1