Linked Data Modeling Language

There is a newer version of the record available.

Published November 29, 2023 | Version v3.6.0
Software Open

Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

Creators

Description

What's Changed

  • adding aspect qualifier enums by @EvanDietzMorris in https://github.com/biolink/biolink-model/pull/1380
  • update name for gtrx infores source to match BTE's name. by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1384
  • reorder id_prefixes for small molecule, fixes #1375 by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1376
  • Update infores_catalog.yaml by @beasleyjonm in https://github.com/biolink/biolink-model/pull/1389
  • PFCOR->PFOCR by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1385
  • Bump certifi from 2023.5.7 to 2023.7.22 by @dependabot in https://github.com/biolink/biolink-model/pull/1382
  • Created new class GeneAffectsChemicalAssociation with qualifiers by @RichardBruskiewich in https://github.com/biolink/biolink-model/pull/1388
  • Cx infores edits by @colleenXu in https://github.com/biolink/biolink-model/pull/1391
  • Update understanding-the-model.md by @pabloDumas in https://github.com/biolink/biolink-model/pull/1394
  • Fix answer appraiser infores by @maximusunc in https://github.com/biolink/biolink-model/pull/1396
  • Update biolink-model.yaml by @mbrush in https://github.com/biolink/biolink-model/pull/1395
  • Chemical prefixes - propagate id_prefixes down the chemical entity hierarchy by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1398
  • Bump urllib3 from 2.0.2 to 2.0.6 by @dependabot in https://github.com/biolink/biolink-model/pull/1397
  • Fix foodb prefixes by @cbizon in https://github.com/biolink/biolink-model/pull/1399
  • Update xref URL for infores:arax in infores_catalog.yaml by @saramsey in https://github.com/biolink/biolink-model/pull/1403
  • add pydantic-v2 model by @glass-ships in https://github.com/biolink/biolink-model/pull/1404
  • Bump urllib3 from 2.0.2 to 2.0.7 by @dependabot in https://github.com/biolink/biolink-model/pull/1400
  • add semantic map to STY:T167, fixes #1370 by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1406
  • Add qualifier to Association by @kevinschaper in https://github.com/biolink/biolink-model/pull/1407
  • Bump urllib3 from 2.0.2 to 2.0.7 by @dependabot in https://github.com/biolink/biolink-model/pull/1409
  • Adds deprecated as a node property slot added to biolink:Entity by @kevinschaper in https://github.com/biolink/biolink-model/pull/1421
  • Update infores_catalog.yaml by @karafecho in https://github.com/biolink/biolink-model/pull/1422
  • Update infores_catalog.yaml by @karafecho in https://github.com/biolink/biolink-model/pull/1423
  • bump release to pre-doc change, 3.6.0 release, regenerate pydantic models by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1427

New Contributors

  • @pabloDumas made their first contribution in https://github.com/biolink/biolink-model/pull/1394
  • @maximusunc made their first contribution in https://github.com/biolink/biolink-model/pull/1396
  • @saramsey made their first contribution in https://github.com/biolink/biolink-model/pull/1403
  • @glass-ships made their first contribution in https://github.com/biolink/biolink-model/pull/1404

Full Changelog: https://github.com/biolink/biolink-model/compare/v3.5.4...v3.6.0

Notes

Please cite the following works when using this software.

Files

biolink/biolink-model-v3.6.0.zip

Files (5.8 MB)

Name Size Download all
md5:53f4749eac15d85bce3bbfdb8d710c07
5.8 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/biolink/biolink-model/tree/v3.6.0 (URL)