AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Fixes

• Fixed CMake cmake_minimum_required deprecation warning by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2183
• Fixed misleading preequilibration failure messages by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2181
• Removed setuptools<64 restriction by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2180
• Fixed ExpData equality operator for Python by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2194
• Enabled deepcopy for ExpData(View) by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2196
• Allowed subsetting simulation conditions in simulate_petab by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2199
• Set CMake CMP0144 to prevent warning by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2209

Features

• Possibility to evaluate and plot symbolic expressions based on simulation results by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2152
• Easier access to timepoints via ExpDataView by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2193
• Nicer __repr__ for ReturnDataView by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2192

Documentation

• Added installation instructions for Arch Linux by @stephanmg in https://github.com/AMICI-dev/AMICI/pull/2173
• Updated reference list by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2172
• Installation guide: optional requirements by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2207

Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v0.19.0...v0.20.0