labsyspharm/Melanoma_BMAL1_Plasticity: v1.0.0
Creators
- Zhang, Xue1, 2
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Pant, Shishir3
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Ritch, Cecily3, 4
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Tang, Hsin-Yao1
- Shao, Hongguang1
- Dweep, Harsh1, 2
- Gong, Yao-Yu1
- Brooks, Rebekah1
- Brattford, Patricia1
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Wolpaw, Adam5
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Lee, Yool6
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Weeraratna, Ashani7, 8
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Sehgal, Amita9
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Herlyn, Meenhard8
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Kossenkov, Andrew1
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Speicher, David W.1
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Sorger, Peter3
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Santagata, Sandro4
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Dang, Chi V.1, 10, 2, 11
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1.
The Wistar Institute
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2.
Ludwig Cancer Research
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3.
Harvard Medical School
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4.
Brigham and Women's Hospital
- 5. The Children's Hospital of Philadelphia
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6.
Washington State University
- 7. Johns Hopkins University Bloomberg School of Public Health
- 8. Wistar Institute
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9.
University of Pennsylvania
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10.
Johns Hopkins University
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11.
Johns Hopkins University School of Medicine
Contributors
Contact person:
Description
Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1
Visit the following Github repository for the latest version: https://github.com/labsyspharm/Melanoma_BMAL1_Plasticity
Data Access
Visit the following Zenodo page for instructions on how to access primary image data associated with this publication: Access Laboratory of Systems Pharmacology Datasets on AWS, DOI: 10.5281/zenodo.10223573
AWS Bucket
To access the data associated with this page you will need the AWS bucket name: lsp-public-data/zhang-2023-melanoma-bmal1-plasticity/
Explore Data
To explore the full-resolution data in a web-browser visit: https://www.cycif.org/data/zang-2023/
Data Index
FILE TYPES AND ACCESS LOCATIONS
Each folder corresponds to a patient sample (N). The following files are available for each patient and are located on Amazon Web Services (AWS).
| N.ome.tif | Stitched multiplex CyCIF image pyramid in ome.tif format |
| markers.csv | List of all markers in ome.tif image |
FILE LIST
6 cores (with the following conditions: EV 1/2, WT 1/2, and dKLH 1/2) and their corresponding marker .csv files
EV 1/2
LSP12583-EV-1--SOX9-SOX10-KI67.ome.tif
LSP12583-EV-2--SOX9-SOX10-KI67.ome.tif
LSP12583-EV-1.csv
LSP12583-EV-2.csv
WT 1/2
LSP12583-WT-1--SOX9-SOX10-KI67.ome.tif
LSP12583-WT-2--SOX9-SOX10-KI67.ome.tif
LSP12583-WT-1.csv
LSP12583-WT-2.csv
dHLH 1/2
LSP12583-dHLH-1--SOX9-SOX10-KI67.ome.tif
LSP12583-dHLH-2--SOX9-SOX10-KI67.ome.tif
LSP12583-dHLH-1.csv
LSP12583-dHLH-2.csv
Contact
Email tissue-atlas(at)hms.harvard.edu with the subject line "zhang-2023-melanoma-bmal1-plasticity: Data Access" if you experience issues accessing the above S3 buckets. Please include the steps you have already tried to help us troubleshoot.
Files
labsyspharm/Melanoma_BMAL1_Plasticity-v1.0.0.zip
Files
(44.2 kB)
| Name | Size | Download all |
|---|---|---|
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md5:ba7b74e7f2cbc360725e3d25aefd013a
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44.2 kB | Preview Download |
Additional details
Related works
- Is described by
- 10.1038/s41467-024-44778-2 (DOI)
- Is supplement to
- Software: https://github.com/labsyspharm/Melanoma_BMAL1_Plasticity/tree/v1.0.0 (URL)