Published November 21, 2023 | Version v1.0.0
Data paper Open

labsyspharm/Melanoma_BMAL1_Plasticity: v1.0.0

  • 1. ROR icon The Wistar Institute
  • 2. ROR icon Ludwig Cancer Research
  • 3. ROR icon Harvard Medical School
  • 4. ROR icon Brigham and Women's Hospital
  • 5. The Children's Hospital of Philadelphia
  • 6. ROR icon Washington State University
  • 7. Johns Hopkins University Bloomberg School of Public Health
  • 8. Wistar Institute
  • 9. ROR icon University of Pennsylvania
  • 10. ROR icon Johns Hopkins University
  • 11. ROR icon Johns Hopkins University School of Medicine

Contributors

Contact person:

Description

Cell State Dependent Alteration of Melanoma Plasticity and Immunity by the Circadian Transcription Factor Bmal1

Visit the following Github repository for the latest version: https://github.com/labsyspharm/Melanoma_BMAL1_Plasticity

Data Access

Visit the following Zenodo page for instructions on how to access primary image data associated with this publication: Access Laboratory of Systems Pharmacology Datasets on AWS, DOI: 10.5281/zenodo.10223573

AWS Bucket 

To access the data associated with this page you will need the AWS bucket name: lsp-public-data/zhang-2023-melanoma-bmal1-plasticity/

Explore Data

To explore the full-resolution data in a web-browser visit: https://www.cycif.org/data/zang-2023/

Data Index

FILE TYPES AND ACCESS LOCATIONS

Each folder corresponds to a patient sample (N). The following files are available for each patient and are located on Amazon Web Services (AWS).  

N.ome.tif Stitched multiplex CyCIF image pyramid in ome.tif format
markers.csv List of all markers in ome.tif image  

FILE LIST

6 cores (with the following conditions: EV 1/2, WT 1/2, and dKLH 1/2) and their corresponding marker .csv files

EV 1/2

LSP12583-EV-1--SOX9-SOX10-KI67.ome.tif

LSP12583-EV-2--SOX9-SOX10-KI67.ome.tif 

LSP12583-EV-1.csv

LSP12583-EV-2.csv 

WT 1/2

LSP12583-WT-1--SOX9-SOX10-KI67.ome.tif 

LSP12583-WT-2--SOX9-SOX10-KI67.ome.tif  

LSP12583-WT-1.csv

LSP12583-WT-2.csv 

dHLH 1/2

LSP12583-dHLH-1--SOX9-SOX10-KI67.ome.tif 

LSP12583-dHLH-2--SOX9-SOX10-KI67.ome.tif 

LSP12583-dHLH-1.csv 

LSP12583-dHLH-2.csv 

Contact

Email tissue-atlas(at)hms.harvard.edu with the subject line "zhang-2023-melanoma-bmal1-plasticity: Data Access" if you experience issues accessing the above S3 buckets. Please include the steps you have already tried to help us troubleshoot.

Files

labsyspharm/Melanoma_BMAL1_Plasticity-v1.0.0.zip

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Additional details

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