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Published November 21, 2023 | Version 23.2.0a1
Software Open

fMRIPrep: a robust preprocessing pipeline for functional MRI

Authors/Creators

  • 1. Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
  • 2. Department of Psychology, Stanford University
  • 3. Montreal Neurological Institute, McGill University
  • 4. Neuroscience Program, University of Iowa
  • 5. Department of Psychology, Florida International University
  • 6. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
  • 7. Machine Learning Team, National Institute of Mental Health

Contributors

Researcher (46):

  • 1. Department of Radiology, Lausanne University Hospital and University of Lausanne
  • 2. Florey Institute of Neuroscience and Mental Health
  • 3. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
  • 4. Department of Psychology, Stanford University
  • 5. Neurospin, CEA
  • 6. Dartmouth College: Hanover, NH, United States
  • 7. Department of Neuroscience, University of Pennsylvania, PA, USA
  • 8. Montreal Neurological Institute, McGill University
  • 9. University of Texas at Austin
  • 10. Department of Psychology, New York University
  • 11. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 12. Charite Universitatsmedizin Berlin, Germany
  • 13. Child Mind Institute
  • 14. Speech & Hearing Bioscience & Technology Program, Harvard University
  • 15. Department of Psychology, University of California, Berkeley
  • 16. Department of Psychology, Columbia University
  • 17. Computational Neuroimaging Lab, BioCruces Health Research Institute
  • 18. Department of Radiology, Weill Cornell Medicine
  • 19. Department of Psychology, Harvard University
  • 20. Perelman School of Medicine, University of Pennsylvania, PA, USA
  • 21. Center for Lifespan Changes in Brain and Cognition, University of Oslo
  • 22. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
  • 23. Department of Psychiatry, McGill University
  • 24. McLean Hospital Brain Imaging Center, MA, USA
  • 25. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
  • 26. Department of Psychology, New York University, NY, USA
  • 27. Max Planck Institute for Empirical Aesthetics
  • 28. URPP Dynamics of Healthy Aging, University of Zurich
  • 29. Cyceron, UMS 3408 (CNRS - UCBN), France
  • 30. Neuroscience Program, University of Iowa
  • 31. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
  • 32. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
  • 33. Center for Brain Imaging, New York University
  • 34. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University
  • 35. McGovern Institute for Brain Research, MIT, MA, USA

Description

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Files

nipreps/fmriprep-23.2.0a1.zip

Files (25.1 MB)

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Additional details

Related works

Documents
https://fmriprep.org (URL)
Is part of
10.1038/s41592-018-0235-4 (DOI)