Published November 21, 2023
| Version 23.2.0a1
Software
Open
fMRIPrep: a robust preprocessing pipeline for functional MRI
Authors/Creators
- 1. Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland
- 2. Department of Psychology, Stanford University
- 3. Montreal Neurological Institute, McGill University
- 4. Neuroscience Program, University of Iowa
- 5. Department of Psychology, Florida International University
- 6. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
- 7. Machine Learning Team, National Institute of Mental Health
Contributors
Researcher (46):
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Provins, Céline1
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Smith, Robert E.2
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Finc, Karolina3
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Feingold, Franklin4
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Papadopoulos, Dimitri5
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Halchenko, Yaroslav O.6
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Tooley, Ursula A.7
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Bhagwat, Nikhil8
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de la Vega, Alejandro9
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Benson, Noah C.10
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Urchs, Sebastian8
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Schaefer, Theo A.J.11
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Waller, Lea12
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Heinsfeld, Anibal S.13
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Mentch, Jeff14
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Lurie, Daniel J.15
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Jacoby, Nir16
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Erramuzpe, Asier17
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Jamison, Keith W.18
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Wexler, Joseph B.4
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Plunkett, Dillon19
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Nitsch, Alexander11
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Ma, Feilong6
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Adebimpe, Azeez20
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Amlien, Inge K.21
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Bellec, Pierre22
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Cieslak, Matthew20
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Devenyi, Grabriel A.23
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Frederick, Blaise B.24
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Gomez, Daniel E. P.25
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Groen, Iris I. A.26
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Isik, Ayse Ilkay27
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Liem, Franz28
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Moodie, Craig A.4
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Naveau, Mikaël29
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Rivera-Dompenciel, Adriana30
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Satterthwaite, Theodore D.20
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Sitek, Kevin R.14
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Sneve, Markus H.21
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Stojić, Hrvoje31
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Thompson, William H.4
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Valabregue, Romain32
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Velasco, Pablo33
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Wright, Jessey4
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Ye, Zhifang34
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Ghosh, Satrajit S.35
- 1. Department of Radiology, Lausanne University Hospital and University of Lausanne
- 2. Florey Institute of Neuroscience and Mental Health
- 3. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
- 4. Department of Psychology, Stanford University
- 5. Neurospin, CEA
- 6. Dartmouth College: Hanover, NH, United States
- 7. Department of Neuroscience, University of Pennsylvania, PA, USA
- 8. Montreal Neurological Institute, McGill University
- 9. University of Texas at Austin
- 10. Department of Psychology, New York University
- 11. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 12. Charite Universitatsmedizin Berlin, Germany
- 13. Child Mind Institute
- 14. Speech & Hearing Bioscience & Technology Program, Harvard University
- 15. Department of Psychology, University of California, Berkeley
- 16. Department of Psychology, Columbia University
- 17. Computational Neuroimaging Lab, BioCruces Health Research Institute
- 18. Department of Radiology, Weill Cornell Medicine
- 19. Department of Psychology, Harvard University
- 20. Perelman School of Medicine, University of Pennsylvania, PA, USA
- 21. Center for Lifespan Changes in Brain and Cognition, University of Oslo
- 22. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
- 23. Department of Psychiatry, McGill University
- 24. McLean Hospital Brain Imaging Center, MA, USA
- 25. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
- 26. Department of Psychology, New York University, NY, USA
- 27. Max Planck Institute for Empirical Aesthetics
- 28. URPP Dynamics of Healthy Aging, University of Zurich
- 29. Cyceron, UMS 3408 (CNRS - UCBN), France
- 30. Neuroscience Program, University of Iowa
- 31. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
- 32. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
- 33. Center for Brain Imaging, New York University
- 34. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University
- 35. McGovern Institute for Brain Research, MIT, MA, USA
Description
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Files
nipreps/fmriprep-23.2.0a1.zip
Files
(25.1 MB)
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md5:19d358a30de3b1d668df934ef24557a8
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Additional details
Related works
- Documents
- https://fmriprep.org (URL)
- Is part of
- 10.1038/s41592-018-0235-4 (DOI)