Coronavirus Disease Research Community - COVID-19

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Published November 7, 2023 | Version 1.19.0
Software Open

Flowminder/FlowKit: 1.19.0

Authors/Creators

  • 1. @Flowminder
  • 2. Code AI Ltd.
  • 3. @dotfive
  • 4. Flowminder
  • 5. Gitter

Description

Added

  • FlowETL now updates a new table events.location_ids each time a new day of CDR data is ingested, to record the first and last date that each location ID appears in the data. #5376
  • New FlowETL QA check "count_locatable_events", which counts the number of added rows with location ID corresponding to a cell with a known location. #5289
  • flowkit_jwt_generator is now published as a wheel via pypi

What's Changed

  • Bump numpy from 1.24.2 to 1.24.3 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6077
  • Bump pandas from 2.0.0 to 2.0.1 in /flowdb/testdata/synthetic_data by @dependabot in https://github.com/Flowminder/FlowKit/pull/6081
  • Bump pandas from 2.0.0 to 2.0.1 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6083
  • Bump pandas from 2.0.0 to 2.0.1 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6082
  • Remove quotes from default data path by @Thingus in https://github.com/Flowminder/FlowKit/pull/6079
  • Bump cypress from 12.10.0 to 12.11.0 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6085
  • Bump prettier from 2.8.7 to 2.8.8 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6074
  • Bump date-fns from 2.29.3 to 2.30.0 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6090
  • Bump ipython from 8.12.0 to 8.12.1 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6093
  • Bump pre-commit from 3.2.2 to 3.3.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6096
  • Bump pre-commit from 3.3.0 to 3.3.1 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6097
  • Bump flask from 2.2.3 to 2.2.5 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6098
  • Bump ipython from 8.12.1 to 8.12.2 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6100
  • Bump geopandas from 0.12.2 to 0.13.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6101
  • Bump redis from 4.5.4 to 4.5.5 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6103
  • Bump ipykernel from 6.22.0 to 6.23.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6104
  • Bump pyjwt from 2.6.0 to 2.7.0 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6106
  • Bump ipykernel from 6.23.0 to 6.23.1 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6112
  • Bump pyjwt from 2.6.0 to 2.7.0 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6107
  • Bump pyjwt from 2.6.0 to 2.7.0 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6108
  • Bump pre-commit from 3.3.1 to 3.3.2 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6114
  • Bump httpx from 0.24.0 to 0.24.1 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6118
  • Bump requests from 2.30.0 to 2.31.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6122
  • Bump cypress from 12.11.0 to 12.13.0 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6123
  • Bump pytest-cov from 4.0.0 to 4.1.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6127
  • Bump pytest-cov from 4.0.0 to 4.1.0 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6124
  • Bump pytest-cov from 4.0.0 to 4.1.0 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6126
  • Bump pytest-cov from 4.0.0 to 4.1.0 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6125
  • Bump cachetools from 5.3.0 to 5.3.1 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6133
  • Bump pyzmq from 25.0.2 to 25.1.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6134
  • Bump pandas from 2.0.1 to 2.0.2 in /flowdb/testdata/synthetic_data by @dependabot in https://github.com/Flowminder/FlowKit/pull/6136
  • Bump pandas from 2.0.1 to 2.0.2 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6137
  • Bump pandas from 2.0.1 to 2.0.2 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6138
  • Bump cryptography from 40.0.2 to 41.0.0 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6140
  • Bump cryptography from 40.0.2 to 41.0.0 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6141
  • Bump cryptography from 41.0.0 to 41.0.1 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6144
  • Bump cryptography from 40.0.2 to 41.0.0 in /deployment by @dependabot in https://github.com/Flowminder/FlowKit/pull/6145
  • Bump cryptography from 41.0.0 to 41.0.1 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6143
  • Bump geopandas from 0.13.0 to 0.13.1 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6150
  • Fix build issues with synth data and test data flowdb by @greenape in https://github.com/Flowminder/FlowKit/pull/6163
  • Location ids table and locatable events QA check by @jc-harrison in https://github.com/Flowminder/FlowKit/pull/6164
  • Pinning pyyaml in progress by @Thingus in https://github.com/Flowminder/FlowKit/pull/6259
  • Bump click from 8.1.3 to 8.1.6 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6227
  • Bump cryptography from 41.0.0 to 41.0.3 in /deployment by @dependabot in https://github.com/Flowminder/FlowKit/pull/6246
  • Bump cryptography from 41.0.1 to 41.0.3 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6247
  • Bump pyotp from 2.8.0 to 2.9.0 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6241
  • Bump pyjwt from 2.7.0 to 2.8.0 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6228
  • Bump certifi from 2023.5.7 to 2023.7.22 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6237
  • Bumping airflow + hash to 2.6.3 by @Thingus in https://github.com/Flowminder/FlowKit/pull/6258
  • Bump pyjwt from 2.7.0 to 2.8.0 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6229
  • Bump respx from 0.20.1 to 0.20.2 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6231
  • Fix inconsistent hashing by @greenape in https://github.com/Flowminder/FlowKit/pull/6256
  • Bump psycopg2 from 2.9.6 to 2.9.7 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6273
  • Bump tornado from 6.3.2 to 6.3.3 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6271
  • Bump gitpython from 3.1.31 to 3.1.32 in /flowdb/tests by @dependabot in https://github.com/Flowminder/FlowKit/pull/6262
  • Bump deps 20230815 by @greenape in https://github.com/Flowminder/FlowKit/pull/6274
  • Bump argon2-cffi from 21.3.0 to 23.1.0 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6275
  • Bump asciidoctor from 2.0.18 to 2.0.20 in /autoflow by @dependabot in https://github.com/Flowminder/FlowKit/pull/6116
  • Bump redis from 4.6.0 to 5.0.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6278
  • Bump prettier from 2.8.8 to 3.0.1 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6252
  • Bump cypress from 12.13.0 to 12.17.4 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6276
  • Bump prettier from 3.0.1 to 3.0.2 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6280
  • Bump word-wrap from 1.2.3 to 1.2.5 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6281
  • Bump click from 8.1.6 to 8.1.7 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6283
  • Bump jest from 29.5.0 to 29.6.3 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6287
  • Bump jest from 29.6.3 to 29.6.4 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6293
  • Bump @material-ui/pickers from 3.3.10 to 3.3.11 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6294
  • Bump pytest from 7.4.0 to 7.4.1 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6304
  • Bump pandas from 1.3.5 to 2.1.0 in /flowdb/testdata/synthetic_data by @dependabot in https://github.com/Flowminder/FlowKit/pull/6301
  • Bump pre-commit from 3.3.3 to 3.4.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6306
  • Bump gitpython from 3.1.32 to 3.1.34 in /flowdb/tests by @dependabot in https://github.com/Flowminder/FlowKit/pull/6312
  • Bump pytest from 7.4.0 to 7.4.1 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6305
  • Bump ipykernel from 6.25.1 to 6.25.2 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6310
  • Bump pytest from 7.4.1 to 7.4.2 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6314
  • Bump pytest from 7.4.1 to 7.4.2 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6313
  • Bump approvaltests from 8.4.1 to 9.0.0 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6296
  • Bump black from 23.7.0 to 23.9.1 in /flowdb by @dependabot in https://github.com/Flowminder/FlowKit/pull/6318
  • Bump pytz from 2023.3 to 2023.3.post1 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6311
  • Bump black from 23.7.0 to 23.9.1 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6320
  • Bump python-rapidjson from 1.10 to 1.11 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6322
  • Bump jest from 29.6.4 to 29.7.0 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6325
  • Bump prettier from 3.0.2 to 3.0.3 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6299
  • Bump cryptography from 41.0.3 to 41.0.4 in /deployment by @dependabot in https://github.com/Flowminder/FlowKit/pull/6332
  • Bump httpx from 0.24.1 to 0.25.0 in /flowclient by @dependabot in https://github.com/Flowminder/FlowKit/pull/6323
  • Bump pillow from 10.0.0 to 10.0.1 in /flowdb/tests by @dependabot in https://github.com/Flowminder/FlowKit/pull/6346
  • Bump psutil from 5.9.5 to 5.9.6 in /flowdb by @dependabot in https://github.com/Flowminder/FlowKit/pull/6361
  • Bump @babel/traverse from 7.13.0 to 7.23.2 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6362
  • Bump debug from 3.2.6 to 3.2.7 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6340
  • Bump cypress from 12.17.4 to 13.3.2 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6371
  • Bump generate-password from 1.7.0 to 1.7.1 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6370
  • Bump cypress from 13.3.2 to 13.3.3 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6379
  • Bump browserify-sign from 4.2.1 to 4.2.2 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6382
  • Bump python deps by @jc-harrison in https://github.com/Flowminder/FlowKit/pull/6385
  • Bump black from 23.9.1 to 23.10.1 in /flowdb by @dependabot in https://github.com/Flowminder/FlowKit/pull/6377
  • Add jwt generator wheel by @greenape in https://github.com/Flowminder/FlowKit/pull/6389
  • Add jwt generator wheel by @Thingus in https://github.com/Flowminder/FlowKit/pull/6392

Full Changelog: https://github.com/Flowminder/FlowKit/compare/1.18.4...1.19.0

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Additional details

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Software: https://github.com/Flowminder/FlowKit/tree/1.19.0 (URL)