Published November 3, 2023 | Version 3.0

Phase-contrast time-lapse recordings of four bacterial species growing in microfluidic microtraps

  • 1. Department of Information Technology, Uppsala University
  • 2. Department of Cell and Molecular Biology, Uppsala University

Description

This dataset and software accompany the article "Label-free deep learning based species classification of bacteria imaged by phase-contrast microscopy"  for reproducing the results. The study applies deep-learning based image and video models for species classification of the bacteria Enterococcus faecalis, Escherichia coli, Klebsiella pneumoniae, and Pseudomonas aeruginosa growing in microfluidic chip traps.

Files

replication_package_revision_2.zip

Files (17.8 GB)

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Additional details

Funding

Swedish Foundation for Strategic Research
Mycket snabb antibiotikaresistens bestämning ARC19-0016