COMET Example Directory

The current directory includes example files needed for running the COMET package in R. The example dataset provided in this directory is from publicly available data from Cook et al (2020). If you would like to test our framework on your own dataset please format your input data in a similar fashion as the files in this directory. 

Reference:
Cook, D. P., & Vanderhyden, B. C. (2020). Context specificity of the EMT transcriptional response. Nature communications, 11(1), 2142.