Published August 22, 2022 | Version 1.3
Dataset Open

scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files

  • 1. Institute of Pathology, Charité
  • 2. Harvard Medical School
  • 3. Harvard Medical School, Dana-Farber Cancer Institute, Broad Institute
  • 4. Relation Therapeutics
  • 5. ROR icon Humboldt-Universität zu Berlin
  • 6. ROR icon University of Edinburgh
  • 7. Harvard Medical School, Broad Institute

Description

Collection of h5ad files for RNA and protein single-cell perturbation datasets on scPerturb.org.

For the associated publication, see https://www.nature.com/articles/s41592-023-02144-y.

H5ad files were created using scanpy 1.9.1, using gzip compression.

 

Notes

Version notes: 1.3 adds more RNA datasets

Files

Files (39.8 GB)

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Additional details

Related works

Is published in
Preprint: 10.1101/2022.08.20.504663 (DOI)
Journal article: 10.1038/s41592-023-02144-y (DOI)