Published October 20, 2023 | Version v1
Dataset Open

CD45+ cells from human bladder cancer specimens

Authors/Creators

  • 1. University of Queensland

Description

Background

NK cells are important innate defenders against tumours and have unique abilities to recognize and eliminate cancer cells. Responses to targeted antibody therapeutics are typically limited in bladder tumours, and the functional and immunosuppressive phenotypes of NK cells in this disease are largely unknown.

Methods

Single cell RNA sequencing (scRNAseq) and high-dimensional flow cytometry were used to investigate the phenotype of intratumoural NK cells compared to circulating in patients with bladder cancer.

Findings

NK cells residing within bladder tumours had reduced expression of FcγRIIIa/CD16, the critical receptor for NK-cell-mediated ADCC, on both a transcriptional and protein level. Transcriptional signatures of TGF-β-signalling, a pleiotropic cytokine with known immunosuppressive effects on NK cells, were upregulated in tumour NK cells compared to the blood. In concert, a high TGF-β signature expression also correlated with worse survival and CD16 downregulation. We directly validated this TGF-β mediated CD16 downregulation on NK cells in vitro and it was accompanied by a transition to ILC1-like NK cells. We also uncovered a high proportion of tumour infiltrating-Treg cells, and in vivo studies show that NK cells delivered in the presence of accompanying immune cells have a greater reduction of CD16 compared to NK cells delivered alone.

Interpretation

Thus, this study highlights how TGF-β rich bladder cancers could inhibit NK cell ADCC by downregulating CD16, whereby Treg cells could be a major limiter of NK cell effector functions in these tumours.

Other

Funding provided by: University of Queensland
Crossref Funder Registry ID: https://ror.org/00rqy9422
Award Number:

Methods

All experiments using human samples were conducted according to approvals by the Metro South Human Research Ethics Committee (clearances #HREC/2019/QMS/55385 and HREC/2022/QMS/89430), which were ratified by the UQ Human Research Ethics Committee. Bladder tumor samples were freshly acquired from the Surgical Oncology Unit at the Princess Alexandra Hospital. After an optimized digestion protocol, single cell suspensions were sorted by flow cytometry of CD45+ cells from blood or tumor samples, they were centrifuged at 200 x g for 10 minutes. Supernatant was discarded and pellets were resuspended in 750 μL of Cell Prefixation Buffer (Parse Biosciences, #PBSSB1001). Samples were then fixed using the Parse Biosciences Cell Fixation (v1) kit (Parse Biosciences, #PBSSB1001), as per the manufacturer's instructions and stored at -80° until the start of barcoding and library prep with the Evercode Whole Transcriptome Mini (v1) kit.

Files

B3_all_genes.csv

Files (128.4 MB)

Name Size Download all
md5:8e21e1d57192a82db4cffa01c70b8f60
2.0 MB Preview Download
md5:ec7d543bc496e1b6ad626fbf67eb896d
56.4 kB Preview Download
md5:01e7b3755635e89725af7a6c50112e8b
20.7 MB Download
md5:8e21e1d57192a82db4cffa01c70b8f60
2.0 MB Preview Download
md5:482213d4c784fc06bf69cc9df9699040
39.5 kB Preview Download
md5:b64c83f0b5b5fb27c965d25f7faaaebd
3.4 MB Download
md5:8e21e1d57192a82db4cffa01c70b8f60
2.0 MB Preview Download
md5:ca048b7fa15f52299b7c0872377cfd73
27.6 kB Preview Download
md5:d2743285d05b3442bc8430f34f3105ad
1.6 MB Download
md5:36be3fadb6c4932e8526d910afb59324
4.9 kB Preview Download
md5:8e21e1d57192a82db4cffa01c70b8f60
2.0 MB Preview Download
md5:4f3d9bbb2b89f0e694a76baec54e2a4b
71.6 kB Preview Download
md5:7a501ccd96a8ad854c1ae110223ec497
18.0 MB Download
md5:8e21e1d57192a82db4cffa01c70b8f60
2.0 MB Preview Download
md5:85c2425c060210bbe5557f27070fb2ae
80.7 kB Preview Download
md5:a38c601a8ebc79a2c2269d82016241f7
64.1 MB Download
md5:8e21e1d57192a82db4cffa01c70b8f60
2.0 MB Preview Download
md5:f8abae43ce7625ff1a615e1ba5119743
14.1 kB Preview Download
md5:b69d42a0358de0f07edb1bba23b13121
8.4 MB Download

Additional details

Related works

Is derived from
10.5281/zenodo.8255627 (DOI)