CD45+ cells from human bladder cancer specimens
Description
Background
NK cells are important innate defenders against tumours and have unique abilities to recognize and eliminate cancer cells. Responses to targeted antibody therapeutics are typically limited in bladder tumours, and the functional and immunosuppressive phenotypes of NK cells in this disease are largely unknown.
Methods
Single cell RNA sequencing (scRNAseq) and high-dimensional flow cytometry were used to investigate the phenotype of intratumoural NK cells compared to circulating in patients with bladder cancer.
Findings
NK cells residing within bladder tumours had reduced expression of FcγRIIIa/CD16, the critical receptor for NK-cell-mediated ADCC, on both a transcriptional and protein level. Transcriptional signatures of TGF-β-signalling, a pleiotropic cytokine with known immunosuppressive effects on NK cells, were upregulated in tumour NK cells compared to the blood. In concert, a high TGF-β signature expression also correlated with worse survival and CD16 downregulation. We directly validated this TGF-β mediated CD16 downregulation on NK cells in vitro and it was accompanied by a transition to ILC1-like NK cells. We also uncovered a high proportion of tumour infiltrating-Treg cells, and in vivo studies show that NK cells delivered in the presence of accompanying immune cells have a greater reduction of CD16 compared to NK cells delivered alone.
Interpretation
Thus, this study highlights how TGF-β rich bladder cancers could inhibit NK cell ADCC by downregulating CD16, whereby Treg cells could be a major limiter of NK cell effector functions in these tumours.
Other
Funding provided by: University of Queensland
Crossref Funder Registry ID: https://ror.org/00rqy9422
Award Number:
Methods
All experiments using human samples were conducted according to approvals by the Metro South Human Research Ethics Committee (clearances #HREC/2019/QMS/55385 and HREC/2022/QMS/89430), which were ratified by the UQ Human Research Ethics Committee. Bladder tumor samples were freshly acquired from the Surgical Oncology Unit at the Princess Alexandra Hospital. After an optimized digestion protocol, single cell suspensions were sorted by flow cytometry of CD45+ cells from blood or tumor samples, they were centrifuged at 200 x g for 10 minutes. Supernatant was discarded and pellets were resuspended in 750 μL of Cell Prefixation Buffer (Parse Biosciences, #PBSSB1001). Samples were then fixed using the Parse Biosciences Cell Fixation (v1) kit (Parse Biosciences, #PBSSB1001), as per the manufacturer's instructions and stored at -80° until the start of barcoding and library prep with the Evercode Whole Transcriptome Mini (v1) kit.
Files
B3_all_genes.csv
Files
(128.4 MB)
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Additional details
Related works
- Is derived from
- 10.5281/zenodo.8255627 (DOI)