Published October 20, 2023 | Version v1
Journal article Open

Optimizing Sequence Design Strategies for Perturbation MPRAs: A Computational Evaluation Framework

Authors/Creators

  • 1. ROR icon Rutgers, The State University of New Jersey
  • 2. ROR icon University of California, Berkeley
  • 3. Kyoto University
  • 4. University of California San Francisco
  • 5. ROR icon Weizmann Institute of Science
  • 6. ROR icon Chan Zuckerberg Initiative (United States)
  • 7. ROR icon Ragon Institute of MGH, MIT and Harvard
  • 8. Rutgers The State University of New Jersey

Description

  • pub.fasta: designed sequences
  • index.txt: the sequence names and seq names in the fasta file. 

Files

index.txt

Files (2.5 MB)

Name Size Download all
md5:f9a2ba79d51520dea14d87c564d7be5e
18.2 kB Download
md5:dfe6928a5f6aa4185768598b08576e10
376 Bytes Download
md5:72a550b5375a7954cefa4fa62ef35799
1.1 kB Download
md5:3cb73bf3e6deab4e6c352e0ff3f303bd
10.0 kB Download
md5:6fde033bc0e0ff5303d60c5e0030df30
7.9 kB Download
md5:b218b717282b5037363423fa2b251899
8.2 kB Download
md5:2c09ddc2e1d0da1efc976246e58fefdb
598.8 kB Preview Download
md5:ac253378d24cda7435a0d912c1db9ca1
1.9 MB Download

Additional details

Related works

Is published in
Preprint: 10.1101/2023.09.27.559768 (DOI)

Funding

National Institute of Health
Early epigenetic footprint of neurological diseases K99MH117393
National Institute of Health
Early epigenetic footprint of neurological diseases 5R00MH117393

Dates

Submitted
2023-10-20
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