Published October 19, 2023 | Version v1
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Metabarcoding data processing using dada2 - rbcL

  • 1. ROR icon Grand Valley State University
  • 2. ROR icon University of North Florida

Description

Using the code in this file, we will process rbcL metabarcoding data using the Dada2 pipeline. (DATA REDUCTION STAGE). Our goal is to remove primers, and then use the DADA2 algorithm to assess read quality, denoise, and merge our sequences. Finally, we will assign our sequences to ASVs and assign these to taxonomy using DADA2 and a reference database.

Files

NextGenScript_rbcL.txt

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Additional details

Dates

Submitted
2023-10-19