Published October 19, 2023
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Metabarcoding data processing using dada2 - rbcL
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1.
Grand Valley State University
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2.
University of North Florida
Description
Using the code in this file, we will process rbcL metabarcoding data using the Dada2 pipeline. (DATA REDUCTION STAGE). Our goal is to remove primers, and then use the DADA2 algorithm to assess read quality, denoise, and merge our sequences. Finally, we will assign our sequences to ASVs and assign these to taxonomy using DADA2 and a reference database.
Files
NextGenScript_rbcL.txt
Files
(9.1 kB)
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Additional details
Dates
- Submitted
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2023-10-19