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Published October 18, 2023 | Version v2.0.0
Software Open

oberstal/pfGO: v2.0.0

Authors/Creators

  • 1. University of South Florida

Description

pfGO 2.0.0

This release of pfGO includes several updates to increase utility of output files/remove the need for manual parsing before downstream analyses. Several functions are updated to make automated retrieval/incorporation of latest PlasmoDB annotations for gene products and GO terms easy.

  • Output files for significant genes in significant terms now include mapped GO terms, their definitions, enrichment values and interest-category
  • Formatting fixes to all significant-genes-in-significant-terms output-files for easier downstream parsing.
  • Functions pulling data from PlasmoDB.org now require manual URL entry to circumvent inconsistencies in link-structure

What's Changed

  • Dev by @oberstal in https://github.com/oberstal/pfGO/pull/10
  • Dev by @oberstal in https://github.com/oberstal/pfGO/pull/11
  • updated package description by @oberstal in https://github.com/oberstal/pfGO/pull/12

Full Changelog: https://github.com/oberstal/pfGO/compare/v1.1.1...v2.0.0

Files

oberstal/pfGO-v2.0.0.zip

Files (903.6 kB)

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Additional details

Related works

Is supplement to
Software: https://github.com/oberstal/pfGO/tree/v2.0.0 (URL)