Published October 18, 2023
| Version v1.1.3
Software
Open
pha4ge/hAMRonization: v1.1.3
Authors/Creators
- 1. Faculty of Computer Science, Dalhousie University
- 2. Public Health Agency of Canada
- 3. Theiagen Genomics
- 4. Beiko Lab
- 5. @quadram-institute-bioscience
- 6. McMaster University
Description
Improve parsing of AMRFinderPlus based on recommendation from development team @evolarjun (https://github.com/evolarjun) to skip entries with "INTERNAL_STOP" in method (representing truncated likely non-functional ORF). Note: PARTIAL and PARTIAL_CONTIG_END (ORF continues past end of contig) still reported in hAMRonized results.
Files
pha4ge/hAMRonization-v1.1.3.zip
Files
(4.5 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:1f0ea1864cda79d9d04f19bb2d710165
|
4.5 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/pha4ge/hAMRonization/tree/v1.1.3 (URL)