Genomically predicted theoretical protein mass database for mass spectrometry (GPMsDB) toolkits v1.0.1

GPMsDB-tk/GPMsDB-dbtk are software toolkits for assigning taxonomic identification to user-provided MALDI-TOF mass spectrometry profiles obtained from bacterial and archaeal cultured isolates. They take advantages of a newly developed database of protein mass profiles predicted from ~200,000 bacterial and archaeal genome sequences. This toolkit is also designed to work with customized databases, allowing microbial identification based on user-provided genome/metagenome-assembled genome (MAG) sequences. The GPMsDB-tk is open source and released under the GNU General Public License (Version 3).

New versions may be found in GitHub site (https://github.com/ysekig/GPMsDB-tk). Please post questions and issues related to GPMsDB-tk on the Issues section of the GitHub repository or send mails to the author (y.sekiguchi@aist.go.jp).