Published September 24, 2017 | Version v1
Dataset Open

Reference data used in pufferfish pre-print experiments

Authors/Creators

  • 1. Stony Brook Univeristy
  • 2. Stony Brook University

Description

This holds the reference data used in the pufferfish pre-print.  This includes a specific version of the human transcriptome, the human genome, and a collection of microbial genomes.  These references are also available from different public repositories, but these versions are uploaded here to ease reproducibility of the manuscript's tests, and because the references were pre-processed to replace ambiguous nucleotides with valid ones.

Files

Files (22.6 GB)

Name Size
md5:c019c0bb66e77d22b72f4f92689a4276
19.2 GB Download
md5:b4d0d1b5abd3bd21137947ea9ab6707e
210.6 MB Download
md5:b7d068f525287f5c05be3ffaf954c5b0
3.1 GB Download

Additional details

Related works

Is supplement to
10.1101/191874 (DOI)

References

  • A space and time-efficient index for the compacted colored de Bruijn graph. Fatemeh Almodaresi, Hirak Sarkar, Rob Patro. bioRxiv 191874; doi: https://doi.org/10.1101/191874