Raw diffraction images of endothelin ETB receptor bound to clinical antagonist bosentan and its analog
Authors/Creators
- 1. Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo
- 2. RIKEN SPring-8 Center
Description
Diffraction images of endothelin ETB receptor bound to bosentan (PDB code 5XPR) and K-8794 (5X93).
Bosentan is an oral medication approved for the treatment of pulmonary arterial hypertension. K-8794 is the ETB-selective high-affinity analog of bosentan.
Two datasets of 5X93 were collected with helical method, while for 5XPR 16 small-wedge (10°/crystal) datasets were collected automatically using ZOO system. In both cases the diffraction images were collected from loop-harvested microcrystals using MX225HS CCD detector at a wavelength of 1 Å on BL32XU, SPring-8.
For 5XPR, 14 datasets were merged at 3.6 Å resolution in the published result (Shihoya et al. NSMB 2017) using KAMO; see processing note: https://github.com/keitaroyam/yamtbx/wiki/Processing-ETBR-bonsentan-data-(5XPR)
NOTE
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Most frames have (relatively weak) lipid rings.
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There is the indexing ambiguity problem in 5XPR (space group P3221) that should be resolved before merging.
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5xpr_bosentan/bosentan-1425-01/multi_002_000019.img.bz2 is missing (probably due to a detector problem)
Files
Additional details
Related works
- Cites
- 10.1038/nsmb.3450 (DOI)
- 10.2210/pdb5x93/pdb (DOI)
- 10.2210/pdb5xpr/pdb (DOI)