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New fortran programs for genetic studies with structured antedependence models

David, Ingrid

This project provides fortran scripts to apply, with ASReml, structured antedependence models (SAD) for single trait analysis, multiple-trait analysis or single trait analysis with correlated random effects.

It contains:

- 3 fortran programs: 1) sadmultiuni.f90 to run SAD models with versions 1 to 3 of ASReml 2) sadmultiuni4.f90 to run SAD models in ASReml4 3) matrixSAD.f90 to calculate variance-covariance matrix using SAD parameters.

- 1 tutorial (sadmultiuni_tutorial.pdf)

- 2 sets of examples (ex1.as, ex2.as and their data, pedigree and parameters files)

 

Files (2.2 MB)
Name Size
dataex1
md5:6d89c1f0185034164df91ecbd9a97ee2
676.8 kB Download
dataex2
md5:3e5701ff79304b0a8701384509b4d445
170.6 kB Download
ex1.as
md5:ee389daf35f43e8555589a0e67f4536e
1.1 kB Download
ex2.as
md5:ce630b3bfa63194ecb2546b6e82e5ee3
420 Bytes Download
matrixSAD.f90
md5:c9045264aab2f94f434c7ac2074460f6
5.3 kB Download
para2ex1
md5:0a145de269cefa43a7abfa353fbee7e3
131 Bytes Download
para2ex2
md5:56e2d09c3c63518f7cc61afce92a4939
221 Bytes Download
para3ex1
md5:0a145de269cefa43a7abfa353fbee7e3
131 Bytes Download
para4ex1
md5:7d6e5129374c4f4bdb9215c84c0786ce
247 Bytes Download
paraex1
md5:0a145de269cefa43a7abfa353fbee7e3
131 Bytes Download
paraex2
md5:646dec53e8dcd6911441ba1059ec7743
222 Bytes Download
pedex1
md5:d46ded76d48f45cbd2e8aa75af32beb6
184.8 kB Download
pedex2
md5:cc91726b550ec97be07633ff6ade4e43
6.6 kB Download
sadmultiuni.f90
md5:1dfefca1ef72758d5a122ae78567d7da
38.0 kB Download
sadmultiuni4.f90
md5:20efbedb3235b7f986dce0004104768c
38.0 kB Download
SADmultiuni_tutorial.pdf
md5:bddc173b3d2d585ed5c5f086110f92d0
1.0 MB Download
  • David I., Sanchez J-P., Piles M., (Submitted 2017). Longitudinal analysis of direct and indirect effects on the average daily gain in growing rabbits using a structured antedependence model .

  • David, I., Garreau, H., Balmisse, E., Billon, Y., & Canario, L. (2017). Multiple-trait structured antedependence model to study the relationship between litter size and birth weight in pigs and rabbits. Genetics Selection Evolution, 49(1), 11.

  • David, I., Ruesche, J., Drouilhet, L., Garreau, H., & Gilbert, H. (2015). Genetic modeling of feed intake. Journal of animal science, 93(3), 965-977

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