Published September 19, 2017
| Version v1
Software
Open
New fortran programs for genetic studies with structured antedependence models
Description
This project provides fortran scripts to apply, with ASReml, structured antedependence models (SAD) for single trait analysis, multiple-trait analysis or single trait analysis with correlated random effects.
It contains:
- 3 fortran programs: 1) sadmultiuni.f90 to run SAD models with versions 1 to 3 of ASReml 2) sadmultiuni4.f90 to run SAD models in ASReml4 3) matrixSAD.f90 to calculate variance-covariance matrix using SAD parameters.
- 1 tutorial (sadmultiuni_tutorial.pdf)
- 2 sets of examples (ex1.as, ex2.as and their data, pedigree and parameters files)
Files
SADmultiuni_tutorial.pdf
Files
(2.2 MB)
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Additional details
Funding
References
- David, I., Ruesche, J., Drouilhet, L., Garreau, H., & Gilbert, H. (2015). Genetic modeling of feed intake. Journal of animal science, 93(3), 965-977
- David, I., Garreau, H., Balmisse, E., Billon, Y., & Canario, L. (2017). Multiple-trait structured antedependence model to study the relationship between litter size and birth weight in pigs and rabbits. Genetics Selection Evolution, 49(1), 11.
- David I., Sanchez J-P., Piles M., (Submitted 2017). Longitudinal analysis of direct and indirect effects on the average daily gain in growing rabbits using a structured antedependence model .