Dataset Open Access

Test dataset for ProteinID

Vaudel, Marc; Martens, Lennart; Sigloch, Florian Christoph

This dataset can be used as an input for peptide and protein ID workflows. It was originally published in Vaudel et al., 2014, Proteomics (https://www.ncbi.nlm.nih.gov/pubmed/24678044).

A detailed description of the "qExactive01819" sample can be found on PRIDE (https://www.ebi.ac.uk/pride/archive/projects/PXD000674).

The provided FASTA protein database is the uniprot human reference database with the Crap database added. The second database additionally contains the most common mycoplasma contaminants. Both databases are also available with reversed peptide sequences attached as decoys (tag: "DECOY_"). A detailed description of the provided databases can be found here: https://galaxyproject.github.io/training-material/topics/proteomics/tutorials/database-handling/tutorial.html

Files (1.5 GB)
Name Size
Human_database_(cRAP_added).fasta
md5:eb7c6a012d821af3799e348d482217f1 		13.2 MB Download
Human_database_(cRAP_and_Mycoplasma_added).fasta
md5:4bafd2e20dab0f0ffef3e83c130cc13a 		15.1 MB Download
Human_database_including_decoys_(cRAP_added).fasta
md5:18a8486e6793832174216927218afbc5 		26.8 MB Download
Human_database_including_decoys_(cRAP_and_Mycoplasma_added).fasta
md5:6c034205b3cd2fb0e4b85b6b3ec588b5 		30.7 MB Download
qExactive01819.mgf
md5:52b382b09e69e48d4b13e56e3a784163 		39.9 MB Download
qExactive01819.raw
md5:da9e12e18780eca7a8aafbb5721126f5 		340.6 MB Download
qExactive01819_profile.mzml
md5:70a1b3e804fff4b154e6b9c1eb325c2e 		928.1 MB Download
qExactive01819_vendor-peakPicking.mzml
md5:dda4ad1258575de4ed0ec507d27c9fe1 		132.0 MB Download

  • Drexler and Uphoff, Cytotechnology, 2002. doi:10.1023/A:1022913015916

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Publication date:
April 15, 2017
DOI:
10.5281/zenodo.892005

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proteomics test data
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