Tailseeker 3.1.7: the pipeline for high-throughput RNA poly(A) length and 3′ end modification measurement
Please visit the GitHub page to see more updated information.
Changes in tailseeker 3.1.7
Fix the docker wrapper script to take up the environment variable TAILSEEKER_REFDBDIR correctly.
Remove U3 and 7SL RNAs from contaminant database pipeline.
Fix the compatibility issue with recent versions of snakemake.
Add support for MiSeq v3 chemistry.
Fix a crash issue in tailseq-dedup-perfect when it fails if more than 1024 alignments with less optimal TAIL-seq signals are followed after an alignment with better signals.
Fix a problem in plotting a virtual gel with recent versions of pandas.
tailseeker-3.1.7.tar.gz is a source release. You need to install few external programs to fulfill the dependencies and some build tools before installing it.
tailseeker-3.1.7-bundle-ubuntu_xenial.tar.gz is a full bundle binary release with source codes. It contains pre-built binary files of tailseeker and many of its external dependencies. As the binaries were built on a Intel x64 machine with Ubuntu Linux 16.04, you may encounter some incompatibility problems on the other platforms. It is highly recommended to use the Docker image in those environments.