ANI matrices for isolates from patients with metagenomic evidence of strain replacement

Michael Woodworth

doi:10.5281/zenodo.8432467

Published October 11, 2023 | Version v0.0.1

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ANI matrices for isolates from patients with metagenomic evidence of strain replacement

Michael Woodworth¹

1. Emory University School of Medicine

Matrices of average nucleotide identity (ANI) values for all-vs-all comparisons of isolate genomes of the same species recovered from four participants in the PREMIX study. Genome IDs can be linked to publication by genome metadata found on Emory DataVerse site: https://doi.org/10.15139/S3/GCV41M

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PM01_Ecoli_Ndb_matrix.csv

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PM01_Ecoli_Ndb_matrix.csv md5:95cb5481263c8b99a586ddaf3ddefc53	404 Bytes	Preview Download
PM03_Kpneumoniae_Ndb_matrix.csv md5:c247e4d623c9d8eb838e624658ed2582	565 Bytes	Preview Download
PM04_Ecoli_Ndb_matrix.csv md5:cfb841a18a4763cd42d1e5f528e7e0a7	344 Bytes	Preview Download
PM07_Ecoli_Ndb_matrix.csv md5:34eca336bf506056d9e083e379a0c983	2.0 kB	Preview Download

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License: Creative Commons Attribution 4.0 International

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Created: October 11, 2023
Modified: October 11, 2023

ANI matrices for isolates from patients with metagenomic evidence of strain replacement

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PM01_Ecoli_Ndb_matrix.csv

Files (3.3 kB)