Published August 4, 2017
| Version v1
Dataset
Open
Dataset for a Mouse and Rat heart trancriptomic and co-expression network analysis
Authors/Creators
- 1. Roslin Institute, University of Edinburgh
Description
- mouse_heart_data and rat_heart_expression contain GEO expression matrix for mouse and rat experiments.
- gse_gsm_mouse.txt and gse_gsm_rat.txt contain experiment IDs and series IDs from GEO.
- heart_quantNormData_mouse.tsv and heart_quantNormData_rat.tsv contain normalised expression matrices.
- heart_quantNormData_mouse_1sd.tsv and heart_quantNormData_rat_1sd.tsv contain the normalised expression matrices restricted to genes with a standard deviation higher than 1.
- fileForSCHypeThreshold0.5_heart.txt and fileForSCHypeThreshold0.75_heart.txt are the input for SCHype. schype_output_0.5th_heart.nodes.txt, schype_output_0.5th_heart.edges.txt, schype_output_0.75th_heart.nodes.txt and schype_output_0.75th_heart.edges.txt are the outputs.
- geneLists.zip contains gene lists used for ontology analysis (ENSEMBL gene id)
Notes
Do contact me if you encounter any issues with the files.
Files
heart_tables_Zenodo.zip
Files
(432.1 MB)
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