Published September 20, 2023 | Version v1

Supporting Data for "Allostery in Protein Tyrosine Phosphatases is Enabled by Divergent Dynamics"

  • 1. Medical University of South Carolina

Description

Molecular dynamics topologies (.prmtop), initial coordinates (.inpcrd), and trajectories (.nc) associated with the preprint: https://doi.org/10.1101/2023.07.23.550226. Tarballs are included for each of the six systems, named by the PDB ID for the starting structure and state (ligand/apo). The four replicates of 155ns are included in each tarball in AMBER's netcdf format (.nc). All trajectories have been stripped of solvent and ions and are autoimaged. Input files and an example script for running simulations in AMBER20 are provided (infiles.tar.gz) as well as the topologies and coordinates for the solvated systems (solvated_topologies.tar.gz).

Files

Files (37.6 GB)

Name Size
md5:e8ed4d7fdc577bd7e40044316759d95b
6.4 GB Download
md5:e8c3b892651b847a30900c09d4a875a7
6.4 GB Download
md5:c530744700e09b18dbb91515a96ec558
6.1 GB Download
md5:b9e10f64831719bbf96c073624785bb9
6.1 GB Download
md5:57e2126bdd2402d7ffb26e6064da0e1e
6.3 GB Download
md5:be9e311b03d5ce7f9958aade4b88abfb
6.3 GB Download
md5:4a8c12327ed2f80842fc6e92b03e7c98
4.7 kB Download
md5:988bd45ad053323c5ebecdc609552bd3
7.1 MB Download

Additional details

Related works

Is supplement to
Preprint: 10.1101/2023.07.23.550226 (DOI)

Funding

National Institutes of Health
South Carolina COBRE in Oxidants, Redox Balance and Stress Signaling 1P30GM140964-01