Published October 11, 2024 | Version v0.2.3
Software Open

optimap: An open-source library for the processing of fluorescence video data

Creators

  • 1. University of California, San Francisco

Description

optimap is an open-source Python toolbox for exploring, visualizing, and analyzing high-speed fluorescence imaging data with a focus on cardiac optical mapping data. It includes modules for data input/output, processing scientific video recordings, visualization, motion compensation, trace extraction, and analysis.

GitHub repository: https://github.com/cardiacvision/optimap

Documentation: https://cardiacvision.github.io/optimap/

Tutorials: https://cardiacvision.github.io/optimap/main/tutorials/

Files

optimap-0.2.3.zip

Files (3.4 MB)

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Additional details

Related works

Is supplement to
https://github.com/cardiacvision/optimap/tree/v0.2.3 (URL)

Funding

AI-assisted Imaging and Prediction of Cardiac Arrhythmia Origins using 4D Ultrasound 1DP2HL168071-01
National Institutes of Health

Software

Repository URL
https://github.com/cardiacvision/optimap
Programming language
Python, C++
Development Status
Active