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Published September 8, 2023 | Version v1
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Temperature drives co-limitation of light and nutrients in phytoplankton

Authors/Creators

  • 1. ICBM, Wilhelmshaven
  • 2. LMGE, Clermont Auvergne
  • 3. ICBM, Wilhelmshaven and HIFMB, Oldenburg
  • 4. Carnegie Institution for Science, Stanford, CA

Description

These files contain all data necessary to create the figures published in the study "Temperature drives colimitation of light and nutrients in phytoplankton"

  • The uploaded ZIP file temperature drives colimitation.zip contains all R codes and tables needed for the data analyses used in this study
  • All data needed for the R-scripts are available in the folder 'RTables'
  • A READMe file that descripe all data files is avalable in the ZIP file
  1. R-scripts "a_growth rate_package" and "b_growth rate manually.R": We determined the maximum linear growth rate using the optical density measurements (needed table is "Opticaldensity.txt")
  2. R-script: "c_gamlss_growthrates.R": We used a GAMLSS to search for a model that best described the observed growth rates and used a null model that predicts additive effect on growth (needed table is "growthrates_ODratiobased.txt") - generates data for Figure 1 and Figure 2, and Table 2
  3. R-script "d_gamlss_LRR.R": We calculated the LRR between observed growth rates and growth rates predicted by the null model to classify co-limitation responses in sub-additive (LRR<0) and super-additive (LRR>0) (needed table is "gamlss_fig3") - generates data for Figure 3 and Table 3
  4. R-script "e_data_vizualisation.R" : Contains all R codes to generate all figures

Files

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