Published September 7, 2023
| Version v1
Dataset
Open
The panzootic potential of SARS-CoV-2
Authors/Creators
- 1. Florida Museum of Natural History, University of Florida
- 2. Department of Veterinary Medicine, University of Bari
- 3. Emerging Pathogens Institute, University of Florida
- 4. Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale
- 5. Department of Wildlife Ecology and Conservation, University of Florida
- 6. Florida Museum of Natural History, Biodiversity Institute, University of Florida, Bio
- 7. Johns Hopkins University, School of International Advanced Studies
Description
Our dataset collection comprises files containing tree files and character matrices, serving as invaluable resources for researchers aiming to reproduce or extend the findings presented in our manuscript.
- panzootic_virus_metadata_lineage3.csv - metadata to make the trees (Figure 2)
- panzootic_virus.fa - the virus alignment file (Figure 2)
- panzootic_virus_rooted.treefile - the virus tree file (Figure 2)
- AA_gisaid_revANNA-ADR_05042022finalAL.xlsx - dataset for generation Figure 3
- COVID_ToL,csv - metadata for mammal tree and trait matrix
- COVID_ToL_Infection.csv - metadata for mammal tree and trait matrix
- COVID_ToL_ACE2.csv - metadata for mammal tree and trait matrix
- COVID_ToL_CAT.csv - metadata for cat tree and trait matrix
- TopoFree_ND_MCC_SpeciesTree.rdata - Species tree file
- TopoFree_ND_MCC_SpeciesTree_ace_ACE2_ARD.rdata - Figure S3
- TopoFree_ND_MCC_SpeciesTree_simmap_ACE2_ARD.rdata - Figure S2
- TopoFree_ND_MCC_Famtree_V2.rdata - Family tree file
- TopoFree_ND_MCC_FamTree_V2_ace_ACE2.rdata - Figure S4
- TopoFree_ND_MCC_Famtree_V2_simmap_ACE2.rdata - Figure 4
- TopoFree_ND_CatTree.rdata - Cat tree file
- TopoFree_ND_MCC_CatTree_ace_Infection_ARD.rdata - Figure S6
- TopoFree_ND_MCC_CatTree_simmap_Infection_ARD.rdata - Figure S5
Files
COVID_ToL.csv
Files
(6.0 GB)
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