Dual Simulated SEND and EDX dataset

A simulated SEND + EDX dataset along with the code used to produce it.

• code
  • SEND_ground_Truth_Segment_Model-AB.ipynb (ipynb which outlines the code for end to end data production, however some of the actual SEND data production is done through the gen_data.py and add_noise.py files due to system memory requirements making a cluster job more convenient)
  • gen_data.py (python file for creating an intermediate simulated SEND dataset)
  • add_noise.py (python file that takes the intermediate SEND dataset and samples it to produce pseudo-experimental data)
• phase_maps
  • Contains pairs of jpg/npy files that show/quantify the proportional of each phase at each pixel location as constructed in the atomic model
• data
  • SEND.hspy (the simulated SEND dataset as per the atomic model)
  • EDS.hspy (the simulated EDS dataset)
  • atomic_model.xyz (ASE atomic model for the simulated data)
  • labelled_voxels.npy (the phase labels for the 3d array of volumetric-pixels used to produce the atomic model)