Published August 31, 2023
| Version v.0.5.0
Software
Open
pyrokinetics
Description
What's Changed
- Read appropriate flux file if ExB shear is included by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/121
- Fixed GENE error when paths contain numbers by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/122
- Normalisation refactor by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/97
- Improved get_flux_surface by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/123
- Feature/gene improvements by @mgiacomin in https://github.com/pyro-kinetics/pyrokinetics/pull/127
- Enhancements/jetto kinetics time choice by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/129
- Bugfix/name path pint by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/131
- Enable reading GENE
omegatext file by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/126 - Better method for converting simulation/physical units by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/133
- Bugfix/remove template beta by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/134
- Enhancements/LocalGeometry by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/112
- fix sign for poloidal field fit by @hgd511 in https://github.com/pyro-kinetics/pyrokinetics/pull/137
- Enhancements/add zeff by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/140
- Bugfix/normalisation gene by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/139
- Fix incorrect collisionality for ions when Z!=1 by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/141
- Set squareness to zero when not specifeid in CGYRO input by @mgiacomin in https://github.com/pyro-kinetics/pyrokinetics/pull/142
- Upgrade to latest build system (PEP 517/518/621) by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/147
- Don't run black on removed
setup.pyby @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/148 - Fix/gene fields ballooning by @mgiacomin in https://github.com/pyro-kinetics/pyrokinetics/pull/149
- Don't run flake on nonexistent setup.py by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/150
- Equilibrium refactor and enhancements by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/145
- flake8 fixes by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/151
- Fix/cgyro flux flow shear by @mgiacomin in https://github.com/pyro-kinetics/pyrokinetics/pull/153
- Switched out freegs._geqdsk for freeqdsk.geqdsk by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/154
- Use contourpy instead of scikit-image by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/155
- Handle case when electron is last species by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/156
- Increase tolerance on fourier test by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/157
- Create CITATION.cff by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/158
- Fixed error in reading beta_prime from TGLF input by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/162
- Enhancements/poincare map by @mgiacomin in https://github.com/pyro-kinetics/pyrokinetics/pull/160
- Relax matplotlib contraint to >=3.3.4 (for OMFIT compatibility) by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/169
- Adds automatic COCOS detection and conversion for equilibria by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/161
- Bugfix/nspecies gene by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/172
- Zeff bugfix by @arkabokshi in https://github.com/pyro-kinetics/pyrokinetics/pull/174
- Handle different types of geometries by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/167
- standardize input scripts under templates by @arkabokshi in https://github.com/pyro-kinetics/pyrokinetics/pull/173
- Contributions to 'Feature/p file reader' by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/180
- Add command line interface by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/168
- Multiple GENE fixes by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/177
- Refactor Numerics by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/184
- Bugfix/cocos negative ip bt by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/181
- Bugfix/tglf mxh geometry by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/189
- Added cli for generating input files by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/190
- Removed base object of LocalGeometry as cleverdict as it had odd impa… by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/192
- Enhancements/kinetics units by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/185
- Bugfix/transp major radius by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/193
- S_ZETA mislabel gk input cgyro by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/194
- Check for OMEGA in TRANSP and use .m for quantity if no data by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/195
- Set GENE output time to index and scale by nrg/field istep by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/191
- Enhancements/ion normalsation inputs by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/196
- Example GKOutput Implementation by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/186
- Enhancement/metric terms by @hgd511 in https://github.com/pyro-kinetics/pyrokinetics/pull/165
- Feature/p file reader by @jfparisi in https://github.com/pyro-kinetics/pyrokinetics/pull/179
- Update input.gene by @dake0795 in https://github.com/pyro-kinetics/pyrokinetics/pull/201
- Pin scipy to 1.10.1 by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/211
- Tests: Run example in /tmp by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/209
- WIP: Enhancements/gk output normalisation tweaks by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/213
- Enhancements/gk output normalisation by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/182
- Removed dZ0dr/shift from LocalGeometryFourierGENE.py as they shouldnt… by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/212
- Typo/wrong variable used for temp moment by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/215
- Switch to pyloidal from omas by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/216
- Great rename of modules by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/217
- How to read equilibrium and profiles to create a GK input file by @mgiacomin in https://github.com/pyro-kinetics/pyrokinetics/pull/219
- Docs structure normalisations by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/221
- Enhancements/pyroscan apply func by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/220
- Restrict IDSPy features to Python version >= 3.9 by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/222
- Add method to convert
Pyroobject to IMAS dict by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/113 - Enhancements/gamma exb by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/214
- Reorganise and expand documentation by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/203
- Add neighbours as kwargs for RBFinterp in transp eq by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/224
- Bugfix/gkoutput issues by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/226
- Change theta grid from original geometry to MXH geometry when loading… by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/227
- Update CITATION.cff by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/230
- Bugfix: Prevent main.py running when importing by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/228
- Need |q| for balloon transform in CGYRO by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/231
- Jetto files by @arkabokshi in https://github.com/pyro-kinetics/pyrokinetics/pull/232
- Bugfix/tglf transport eigval by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/237
- Add check for newer gs2 netcdf plus fix eigenfunction attr error by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/238
- Factories and Readers refactor + documentation by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/225
- Shift in kx coord, not ky coord in GENE by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/240
- add linear output documentation files by @hgd511 in https://github.com/pyro-kinetics/pyrokinetics/pull/241
- Add lightweight linear CGYRO scan to templates by @tomneiser in https://github.com/pyro-kinetics/pyrokinetics/pull/242
- Enhancement/reduce memory usage by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/239
- Fix alpha temp by @arkabokshi in https://github.com/pyro-kinetics/pyrokinetics/pull/244
- Select fields to load from data coords by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/243
- Remove deprecated system_packages for RTD by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/250
- @hgd511 made their first contribution in https://github.com/pyro-kinetics/pyrokinetics/pull/137
- @arkabokshi made their first contribution in https://github.com/pyro-kinetics/pyrokinetics/pull/174
- @jfparisi made their first contribution in https://github.com/pyro-kinetics/pyrokinetics/pull/179
- @tomneiser made their first contribution in https://github.com/pyro-kinetics/pyrokinetics/pull/242
Full Changelog: https://github.com/pyro-kinetics/pyrokinetics/compare/v0.4.0...v.0.5.0
Notes
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pyro-kinetics/pyrokinetics-v.0.5.0.zip
Files
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Additional details
Related works
- Is supplement to
- https://github.com/pyro-kinetics/pyrokinetics/tree/v.0.5.0 (URL)