Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"
Authors/Creators
- 1. Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
- 2. Swedish Museum of Natural History, Stockholm, Sweden
- 3. Departamento de Zoología, Instituto de Biología, Universidad Nacional Autonoma de México, Ciudad de México, México
Description
The data set consists of siz folders:
1) "genome_data": GenBank-formatted annotation files for newly sequenced Providencia siddallii endosymbionts.
2) "orthoMCL_data": Flat-text output files from the OrthoMCL pipeline.
3) "phylongey": MrBayes run files for Providencia spp. Bayesian phylogenetic inference.
4) "UGA_proteins_and_genes": FASTA-formatted alignments of UGA-containing protein-coding gene sequences from figure 3 and table 3.
5) "RepeatModeler_Prsiddallii": Log files for RepeatModeler runs of P. siddallii genomes.
6) "checkM2_Psiddallii": checkM2 input and output files for P. siddallii protein sets.
7) "breseq_runs": breseq output folders for variant calling on newly assembled genomes.
8) "GSAlign_Prsiddallii_GTOCOR": output files of variant calling using GSAlign between P. siddallii strain GTOCOR1 (sampled in 2015 and reported in Manzano-Marín et. al. 2015 GBE) and GTOCOR2 (sampled in 2019 and reported in the associated work).
Notes
Files
Files
(19.3 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:7cb95ee1d031091c13e7a77c442697ec
|
19.3 MB | Download |
|
md5:3c01f3fd60dc36401ccecb638cbbcfed
|
78 Bytes | Download |