Published August 29, 2023 | Version v1
Dataset Open

Human genome assemblies enhanced by LOCLA

Authors/Creators

  • 1. Institute of Information Science, Academia Sinica, Taipei, 115, TAIWAN
  • 2. Ocean Data Bank, Institute of Oceanography, National Taiwan University, Taipei, TAIWAN
  • 3. TMU Research Center of Cancer Translational Medicine, Taipei Medical University, Taipei, TAIWAN

Description

This is a data repository for the genome assemblies of three human samples enhanced by LOCLA (DOI: 10.5281/zenodo.8280853 ). LOCLA is a novel genome assembly optimization tool, LOCLA, that iteratively improves the quality of an assembly by locating sequencing reads on partially assembled scaffolds and thus enable gap filling and further scaffolding. 

The three human genome assemblies and the assembly statistics are compressed into one single zip file. File names are explained as follows:

  1. LLD0021C_locla.fasta : Whole genome assembly of a Taiwanese male individual generated by LOCLA
  2. LLD0021C_locla_quality.txt : Assembly statistics of LLD0021C_locla.fasta
  3. chm13_locla.fasta : Whole genome assembly of the CHM13 cell line generated by LOCLA
  4. chm13_locla_quality.txt : Assembly statistics of chm13_locla.fasta
  5. hg002_gma_locla.fasta : Whole genome assembly of the HG002 sample generated by LOCLA 
  6. hg002_gma_locla_quality.txt : Assembly statistics of hg002_gma_locla.fasta

 

Files

locla-humandata.zip

Files (2.6 GB)

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